Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01255 ATGGCCTCAAAACAATCTTCAAAACAACCCATTATCTCCCCATGGAGAAAATTCTACACAGTCTCTCTAATCCTCTTCCTCTGTTTTTTCTCTTACTTTCTCGGCCTCCGTCAACGACAACCCTCCTCCGCCGCCCTCCTCCGTTGCACCACCCTCCAAAACATCACCATCACTGCAAAACCCAACAACTATTTTCCGGCATGTGGGGTGGAGTACAGCGAGTACACGCCATGCGAGGACACGAAAAGGTCTTTGAAGTTCAGCAGAGACAGACTGATTTACAGAGAGAGGCACTGCCCGGAAAAAGAGGAGGTTTTGAAGTGCCGGATTCCTCCGCCGCCTGGGTACCGGAATCCGTTTTCGTGGCCGGTGAGTAGAGATTTGGCGTGGTATGTGAATGTACCGCATAAGCATCTGACGGTGGAGAAAGCTGTGCAGAATTGGATAAGATATGAAGGCGACACGTTTAGATTTCCCGGCGGAGGGACGATGTTCCCTGACGGAGCTGATGCTTACATTGATAATATTGGGAAATTAATTAATCTCAAAGATGGCTCCATCAGAACCGCCATTGATACTGGCTGTGGGGTGGGAAGTTGGGGAGCTTATCTACTGTCGAGGGACATAGTAACGATGTCGTTTGCACCAAGGGACACTCATGAAGCCCAAGTTCAGTTTGCTTTGGAGAGAGGAGTTCCTGCACTCATTGGCATTCTTGCCTCTAAGAGACTCCCTTATCCTTCAAATGCCTTTGACATGGCTCATTGCTCTCGCTGCCTCATTCCTTGGCCAAAATATGATGGGATCTTCCTCATTGAAGTTGATCGAGTTCTACGCCCCGGCGGATACTGGATTTTATCAGGCCCTCCAATCAACTGGAAGAAACACTGGAAAGGTTGGGAAAGAACAAAGGAAGATTTGAATTCTGAACAGCTTGCCATTGAAAAGGTAGCCAAAAGCCTCTGTTGGACTAAACTAGTGGAAGCTGGTGATATTGCCATTTGGCAAAAGCCTATCAATCACTTCAACTGCAAACTCAACCGCAAGATCACAAAAAATCCACCTTTCTGTAATGCCCAAGATCCTGACAAAGCTTGGTATACAGATATGCAAGCTTGTTTGACACACTTGCCTGAAGTTTCAAACGGTAAGGAAATTGCAGGAGGGAAGTTGGCAAGATGGCCAGAAAGGCTAAATGCAATCCCACAAAGGATTAGCAGAGGAACTGTGAAAGGTTTGACAGAAGAAATTTTCATTCATGATTCTGAAATATGGAAGAAGAGATTGTCATATTACAGAACCATCAACAATCAGTTGAGTAAGCCCGGTCGGTACCGCAATTTCTTAGACATGAATGCTTTCTTGGGTGGATTTGCTGCTGCTCTAGTTGATGATCCAGTTTGGGTGATGAATGTGGTCCCTGTGGATGTCAAAGTCAATACGCTCGGAGTCATATACGATAGGGGTTTAATCGGCACGTACCAAGATTGGTGTGAGGCAATGTCTACTTATCCAAGAACTTATGACTTCATTCATGCTGATTCAGTTTTTAGCCTCTATGAGAATAGATGTGAAATGGAAGATATTCTACTTGAAATGGACAGAATTCTGAGGCCAGAAGGAAGCGTAATCTTCCGAGAGAACATCGACATATTGGCGAAAATCAAGACGATAACCGATAAGTTGAATTGGAGCAGTCAAATTGTGCATCATGAAGATGGACCTTATCATATGGAGAAACTTCTATTTGCAGTCAAAAACTATTGGACAGCACCTCCTGAACTTTCTGATCAACAACAAGGATCTAAAGCAACTTAA 1818 44.77 MASKQSSKQPIISPWRKFYTVSLILFLCFFSYFLGLRQRQPSSAALLRCTTLQNITITAKPNNYFPACGVEYSEYTPCEDTKRSLKFSRDRLIYRERHCPEKEEVLKCRIPPPPGYRNPFSWPVSRDLAWYVNVPHKHLTVEKAVQNWIRYEGDTFRFPGGGTMFPDGADAYIDNIGKLINLKDGSIRTAIDTGCGVGSWGAYLLSRDIVTMSFAPRDTHEAQVQFALERGVPALIGILASKRLPYPSNAFDMAHCSRCLIPWPKYDGIFLIEVDRVLRPGGYWILSGPPINWKKHWKGWERTKEDLNSEQLAIEKVAKSLCWTKLVEAGDIAIWQKPINHFNCKLNRKITKNPPFCNAQDPDKAWYTDMQACLTHLPEVSNGKEIAGGKLARWPERLNAIPQRISRGTVKGLTEEIFIHDSEIWKKRLSYYRTINNQLSKPGRYRNFLDMNAFLGGFAAALVDDPVWVMNVVPVDVKVNTLGVIYDRGLIGTYQDWCEAMSTYPRTYDFIHADSVFSLYENRCEMEDILLEMDRILRPEGSVIFRENIDILAKIKTITDKLNWSSQIVHHEDGPYHMEKLLFAVKNYWTAPPELSDQQQGSKAT 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20318940 20323221 - Lsi05G012550.1 Lsi05g01255 663747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01255 605 CDD AdoMet_MTases 189 283 - -
Lsi05g01255 605 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 55 594 IPR004159 GO:0008168
Lsi05g01255 605 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 96 294 IPR029063 -
Lsi05g01255 605 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 74 586 IPR004159 GO:0008168
Lsi05g01255 605 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 350 581 IPR029063 -
Lsi05g01255 605 PANTHER METHYLTRANSFERASE PMT15-RELATED 55 594 - -
Lsi05g01255 605 Gene3D Vaccinia Virus protein VP39 161 325 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01255 - - - csv:101216405 1153.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01255 Lsi-Chr5:20318940 Lsi09g00106 Lsi-Chr9:969271 0 dispersed
Lsi07g01230 Lsi-Chr7:17959127 Lsi05g01255 Lsi-Chr5:20318940 0 transposed
Lsi05g01255 Lsi-Chr5:20318940 Lsi05g02006 Lsi-Chr5:27120598 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g607 . . . . . . . Bma14g02088 Cmo16g00150 Cmo18g01254 . . . . Sed02g1606 . Cpe14g00121 Bhi01g01355 Tan01g0280 Cmetu06g0945 . Hepe07g0181 Mch10g0177 . . . . . . . . . . . . Lsi05g01255 . . Cme06g00973 . . . . . . . . . . . Cma16g00143 Cma18g01231 Car16g00124 Car18g01135 . . . . . . . . . Cla05g00857 Cam05g0943 Cec05g0948 Cco05g0948 Clacu05g0930 Cmu05g0888 Cre05g0973 . Csa03g01687 Chy06g00920 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002128 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 4 2 3 1 2 2 2 2 2 2 2 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01255 Lsi_Chr05 FPKM 21.630762 24.746721 14.489225 12.129392 11.260289 11.901114 13.534139 17.428761 16.767881 20.33102