Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01257 ATGGCATCTTCTCGTCTGACTGGAGGATTAGCTCAATCTCCATCAAGTTCTGGGATTTTCTACCAAGGAGAAGGGCAGTCCCCAGCTATTGTTAATTCTCATTTGAGCCAATCATTTGCAAATTCATCAAATTCAATTCCAGGAACTGGATGTTCTGATTTTGGTCCAGTTTCCGGAGACATGAACAATGCAGTTTTAAATAGTGTGGCAAATTCAGGACCCAGTGTGGGTGCAAGTTCATTAGTTACGGATGCAAACTCTGCCCTTTCAGGGGGGCCACATTTGCAAAGGAGTGCAAGCATCAATACCGAGTCATACATGCGCTTGCCTGCATCGCCTATGTCATTCAATTCAAATAACATTAGTGTTTCAGGGTCCTCGGTTATAGATGGATCCTGCGTTGTGCAGCAAAATTCTCAACAGGACCAAAATATCCAACATGTGCAGCAACAGACACAGCAAGGTGCTTCACATGCCACATCATTACCAACATCACAAATAGGCCAAGTATCACTTCCGATGGGCGGTAAACATCAGGGATCTTTCATTCCAGATCCAAATAATTATTCTCAGGTGCAGAAGAAACCACGACTGGATATAAAGCCGGAAGATGTGCTGCAACAGCAAGTTTTGCAGCAGCTATTTCAGAGACAGGATTCCATGCAGTCACAAAACCGTAACTCACAGTTACAATCTTTATTTCAACAGCAAAGAATGCGGCAACAGCAGCAGATTTTGCAGTCTCTACCTCAGTACAGAGCTCAGTTTCAGCAACAGCAGCAGCAGATACAGTTGAGGCAGCAATTGCAACAGCAGGCAATGCAGCCTGTATCACCCATGAAGCGGCCCCCATATGATGCTGGTGGTGTTTGTGCTCGCCGGCTGATGCAGTATTTATATCATCAGCGGCAAAGACCTCCTGAGAATAGTATAGCCTACTGGAGAAAGTTCGTAGCTGAGTATTACTCTCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTGTATGAGAATGTTGGCCACCATGCTCTTGGTGTGTTTCCCCAGGCAGCTATGGATGCGTGGCAGTGTGACATATGTGGTTCCAAATCAGGAAGGGGATTTGAGGCTACGTTTGAAGTACTCCCAAGACTCAGCGAGATCAAATTTGGAAGTGGAGTTATTGATGAGCTTTTATTTCTGGACCTTCCTCAAGAAAGAAGATTTGCTTCTGGAATTATGATGTTAGAATATGGAAAAGCAATTCAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAGGGTCAGCTTCGTATCATATTCACTCAAGACTTGAAGATTTTGTGTTGGGAATTTTGTGCTCGGCGTCATGAAGAACTTCTTCCTCGTAGGTTGGTTGCACCTCAGGTGAATCAGCTGGTACAGGTTGCCCAGAAATGCCAAAACACAATTGCTGAAAGTGGGCCTGATGGTGTTTCTCCGAAAGATTTGCAGACAAATAGCAATATGGTACTGACGGCTGGTCGTCAGCTTGCTAAGAGTCTGGAGTTGCAGTTGCTGAATGACTTGGGTTTCTCTAAAAGATATGTCAGGTGTTTGCAGATATCGGAGGTTGTCAACAGTATGAAAGATCTGATTGGTTTCTGCCGGGATCAAAAAGTTGGGCCTATTGAGGGCTTGAAGAATTATCCTAGACATGCCACTGCAGCCAAGCTCCAAATGCAAAAAATGCAGGAGATGGAACAGTTAGCGAGTATTCAAGGTCTTCCCACAGACCGCAACACAATTAATAAGCTGATGACATTGCATCCTGAACTTGATAGCCATGGGATTAATAACCATCAGATGATTGGTCGAGGAGGTTTCGGTGGTTCAGCACAAGCTGCTTTGGCAATGACTACATACCAGAATATCCTCATGAGACAGAACTCTATGAATTCCAACCCCAGCCCACATCAACAGGAGGCCTCGACTTCTTTCAATAATCCCAACTATAATCCATCCCATACACTCCAGGGGACTGCATGCCTGATGCCTGGAACCATACAGAACTCCTCTGTTGGTGGCTTTTCAGGCGCCCAGCAACCCTTGCAAAAGCAATCGCAGCAGCTGCAACATCATCAACCAAATGCTGGCTCCTTGGTCCAGCAAAATCATCCTCAGACGATTCAAGGTAACCAGGCCCTACAACAACAGATGATCCAGCAACTAATGCAGATGTCAAGTAACAGTAAGAGTGGCGGTTTACAACAGCAACCCCTTACCGGACCAAATGCAAATATAAGTTTAGGAAGAAGGGGTATGGGTTTTGTGGGCAACACCTCAGTTGCAGCTGTGGCATCTGGAAATCTGTCTGGTAGCAACGTCCCTGTCCCTGGCCCAAGTAGGAGCAATAGCTTCAAAGCTGCTTCAAATAGCGAGTCCTCTGCCGGTAACAGTGGATTCAATCAAAAGGGTTCTGAGTTGCCGCAAGATCTTCATCTGCCTGAGAGTCTGGTTGAAGATATAGGCCAAGATTTTCCTGAAAACGGGTTTATTAACAATGACCTTGATGAGGATTTGGGTTATGTCTGGAAGGCTTGA 2562 45.32 MASSRLTGGLAQSPSSSGIFYQGEGQSPAIVNSHLSQSFANSSNSIPGTGCSDFGPVSGDMNNAVLNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTESYMRLPASPMSFNSNNISVSGSSVIDGSCVVQQNSQQDQNIQHVQQQTQQGASHATSLPTSQIGQVSLPMGGKHQGSFIPDPNNYSQVQKKPRLDIKPEDVLQQQVLQQLFQRQDSMQSQNRNSQLQSLFQQQRMRQQQQILQSLPQYRAQFQQQQQQIQLRQQLQQQAMQPVSPMKRPPYDAGGVCARRLMQYLYHQRQRPPENSIAYWRKFVAEYYSPRAKKRWCLSLYENVGHHALGVFPQAAMDAWQCDICGSKSGRGFEATFEVLPRLSEIKFGSGVIDELLFLDLPQERRFASGIMMLEYGKAIQESVYEQLRVVREGQLRIIFTQDLKILCWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQNTIAESGPDGVSPKDLQTNSNMVLTAGRQLAKSLELQLLNDLGFSKRYVRCLQISEVVNSMKDLIGFCRDQKVGPIEGLKNYPRHATAAKLQMQKMQEMEQLASIQGLPTDRNTINKLMTLHPELDSHGINNHQMIGRGGFGGSAQAALAMTTYQNILMRQNSMNSNPSPHQQEASTSFNNPNYNPSHTLQGTACLMPGTIQNSSVGGFSGAQQPLQKQSQQLQHHQPNAGSLVQQNHPQTIQGNQALQQQMIQQLMQMSSNSKSGGLQQQPLTGPNANISLGRRGMGFVGNTSVAAVASGNLSGSNVPVPGPSRSNSFKAASNSESSAGNSGFNQKGSELPQDLHLPESLVEDIGQDFPENGFINNDLDEDLGYVWKA 853
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20332578 20339095 - Lsi05G012570.1 Lsi05g01257 663749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01257 853 MobiDBLite consensus disorder prediction 636 665 - -
Lsi05g01257 853 MobiDBLite consensus disorder prediction 777 816 - -
Lsi05g01257 853 Pfam LIM-domain binding protein 294 554 IPR029005 -
Lsi05g01257 853 MobiDBLite consensus disorder prediction 777 813 - -
Lsi05g01257 853 PANTHER LIM DOMAIN-BINDING PROTEIN 5 151 IPR029005 -
Lsi05g01257 853 MobiDBLite consensus disorder prediction 680 706 - -
Lsi05g01257 853 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 5 151 - -
Lsi05g01257 853 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 185 846 - -
Lsi05g01257 853 MobiDBLite consensus disorder prediction 140 172 - -
Lsi05g01257 853 MobiDBLite consensus disorder prediction 732 754 - -
Lsi05g01257 853 MobiDBLite consensus disorder prediction 140 192 - -
Lsi05g01257 853 MobiDBLite consensus disorder prediction 1 22 - -
Lsi05g01257 853 PANTHER LIM DOMAIN-BINDING PROTEIN 185 846 IPR029005 -
Lsi05g01257 853 MobiDBLite consensus disorder prediction 732 752 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01257 Lsi09g00593 CCT
Lsi05g01257 Lsi09g00593 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01257 Lsi-Chr5:20332578 Lsi09g00593 Lsi-Chr9:6389304 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01257 - - csv:105434391 1362.44