Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01266 ATGGATTCTTTTTCAACTTTTTATGAAGAGTACTTCTCCAGTTCCGAGAGTAGTAATTGCCGCCGCCCCATTTTTTCCGATGAGGAGATTATGTTGGCGGCGAGCAATCCCAAGAAGAGAGCCGGCAGGAAGAAGTTTAAGGAGACAAGACATCCGGTTTACAGAGGGGTTAGGAGGAGGAACTCCGGCAAGTGGGTCTGTGAAGTGAGAGAGCCTAATAAGAAATCAAGGATTTGGCTTGGCACTTTTCCGACGGCGGAGATGGCGGCTCGGGCTCACGACGTCGCCGCCATCGCGCTTAGAGGTCTCACTGCTTGTCTCAATTTCGCGGATTCTGCGTGGCGGCTGCCTGTGCCGGCGTCTACCGACGCCAGAGATATCCAGAAGGCAGCGGCGGAGGCGGCGGAGGCATTCCGGCCGTCTGAGTCAGATGGGTCTTCGGTTGATGACTCAAGGACGGAAAATGGGATGACGGCGGAAACGAAGCCGGAAAATGTGTTTTACATGGATGAGGAAGCAGTTTTTGGGATGCCAGGATTGTTGGAAGATATGGCTGCGGGGATGATGTTGCCTCCACCTCAGCATTTTCGTGATGACATGGATTTTTATTCTGATGTGTCATTATGGAGCTATTAA 636 51.89 MDSFSTFYEEYFSSSESSNCRRPIFSDEEIMLAASNPKKRAGRKKFKETRHPVYRGVRRRNSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAAIALRGLTACLNFADSAWRLPVPASTDARDIQKAAAEAAEAFRPSESDGSSVDDSRTENGMTAETKPENVFYMDEEAVFGMPGLLEDMAAGMMLPPPQHFRDDMDFYSDVSLWSY 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20431416 20432051 + Lsi05G012660.1 Lsi05g01266 663758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01266 211 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 14 211 - -
Lsi05g01266 211 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Lsi05g01266 211 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Lsi05g01266 211 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Lsi05g01266 211 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Lsi05g01266 211 MobiDBLite consensus disorder prediction 135 163 - -
Lsi05g01266 211 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 14 211 IPR045277 GO:0003700
Lsi05g01266 211 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Lsi05g01266 211 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Lsi05g01266 211 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Lsi05g01266 211 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01928 Lsi-Chr3:30676717 Lsi05g01266 Lsi-Chr5:20431416 8.60E-41 dispersed
Lsi03g01929 Lsi-Chr3:30689276 Lsi05g01266 Lsi-Chr5:20431416 1.76E-45 dispersed
Lsi05g01266 Lsi-Chr5:20431416 Lsi09g00310 Lsi-Chr9:3187047 1.19E-70 dispersed
Lsi07g01412 Lsi-Chr7:20629204 Lsi05g01266 Lsi-Chr5:20431416 7.60E-41 dispersed
Lsi09g00596 Lsi-Chr9:6458757 Lsi05g01266 Lsi-Chr5:20431416 4.85E-86 transposed
Lsi05g01266 Lsi-Chr5:20431416 Lsi09g00309 Lsi-Chr9:3150495 7.23E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25360 PF00847 AP2 1.30E-15 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01266 - K09286 csv:101220749 379.793