Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g01275 | ATGATTCAACAACTGGGAAAAGTGAATGCTTGTTTTCTTGACGTCCAAACAGCGACAAAGAAAATAGTTGAGGTGAGGGAATTTTGCGAGAAACAACTTCGAGAACGTCCAACTCCACAAGCAAAGGAGGATACGGGAGGGCCAGACACTATGATAAATGGTTGCTTAACGAGTTCCCAAAGTTTGAAAAGAGAGAAGGTGGGCAGTACAGCTGATCTCTTCTTCCACAGGAGTAGCTTGAAAAACATACCAAGTGAGCAACTTTTTATGTTCCAAACAATGGCAAAAAATGCATTTCTCTTGTTTCTAATGATGATGGTTTGTCTGTCGGAAGGAGTTCTTGATAGCCATTATTACTCAAAAACATGTCCCAATGCAGAAAAAATCATCCTCCAAACCGTCTATAATGCTTCCATTAATGACCCCAAAGTCCCTGCTCGTCTTCTCAGGCTCTTCTTCCATGATTGTTTCATAAGGGGATGTGATGCATCGGTGTTGTTAGACTCGACATCAGATAATCAGGCAGAGAAAGATGCACCTCCAAACATCTCGCTAAGGTCATTCTATGTGATCGACGAGGCCAAAGCCAAGCTTGAAAGTGCATGCCCACATACTGTTTCTTGTGCTGATATTGTCGCCATTGCTGCTAGAGATGTAGTAACTTTGTCTGGAGGCCCATATTGGAGTGTACTCAAAGGAAGGAAAGATGGGAAGATTTCCAAGGCTTCTGAGGCCATCAACTTGCCAGCTCCAACTTTCAATGTGTCTCAACTCATCCATAGCTTTGCAAACAGAGGATTAGAAGTTAAGGATTTGGTTGCTCTATCTGGGGCTCACACACTTGGATTCTCACATTGTTCTTCCTTTCAATCTAGACTTCGCAACTTCAGCTCGATTCATGAAATTGATCCTACTTTGGAATCTGGGTTTGCCCAAATTCTAAGAAACAAATGTCCAAAACCAAATTTGGACAAAAATGCTGGACAGTTCTTGGACCCAACTTCCTCAACCTTTGACAATGTGTATTACAAGAGACTGTTGGAAGGAAAGGGTGTGTTTGGTTCAGATCAAGCTTTGTTTGCTGATTCTAGAACTAGAGGGCTTGTTAGGTTGTTTGCTCAAGATCAGAACTCGTTCTTTAAGGAGTTTGCAGCTTCAATGGTGAATTTGGGTAATGTTGGGGTAAGTCAAAATGGAAATGTCAGACTCAATTGCCGGGTGGTGAACTGA | 1230 | 42.2 | MIQQLGKVNACFLDVQTATKKIVEVREFCEKQLRERPTPQAKEDTGGPDTMINGCLTSSQSLKREKVGSTADLFFHRSSLKNIPSEQLFMFQTMAKNAFLLFLMMMVCLSEGVLDSHYYSKTCPNAEKIILQTVYNASINDPKVPARLLRLFFHDCFIRGCDASVLLDSTSDNQAEKDAPPNISLRSFYVIDEAKAKLESACPHTVSCADIVAIAARDVVTLSGGPYWSVLKGRKDGKISKASEAINLPAPTFNVSQLIHSFANRGLEVKDLVALSGAHTLGFSHCSSFQSRLRNFSSIHEIDPTLESGFAQILRNKCPKPNLDKNAGQFLDPTSSTFDNVYYKRLLEGKGVFGSDQALFADSRTRGLVRLFAQDQNSFFKEFAASMVNLGNVGVSQNGNVRLNCRVVN | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 20482664 | 20485880 | + | Lsi05G012750.1 | Lsi05g01275 | 663767 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g01275 | 409 | PANTHER | PEROXIDASE 66 | 99 | 408 | - | - | |
Lsi05g01275 | 409 | SUPERFAMILY | Heme-dependent peroxidases | 114 | 409 | IPR010255 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | CDD | secretory_peroxidase | 114 | 408 | IPR033905 | GO:0004601|GO:0042744 | |
Lsi05g01275 | 409 | PRINTS | Plant peroxidase signature | 147 | 167 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | PRINTS | Plant peroxidase signature | 329 | 344 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | PRINTS | Plant peroxidase signature | 345 | 362 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | PRINTS | Plant peroxidase signature | 385 | 398 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | PRINTS | Plant peroxidase signature | 123 | 142 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | PRINTS | Plant peroxidase signature | 186 | 199 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | PRINTS | Plant peroxidase signature | 205 | 215 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | PRINTS | Plant peroxidase signature | 270 | 282 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | PRINTS | Plant peroxidase signature | 224 | 239 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | Pfam | Peroxidase | 136 | 375 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | PANTHER | PEROXIDASE 25-RELATED | 99 | 408 | IPR000823 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | Gene3D | Peroxidase, domain 2 | 249 | 390 | - | - | |
Lsi05g01275 | 409 | ProSiteProfiles | Plant heme peroxidase family profile. | 113 | 409 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 271 | 281 | IPR019793 | - | |
Lsi05g01275 | 409 | PRINTS | Haem peroxidase superfamily signature | 224 | 236 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | PRINTS | Haem peroxidase superfamily signature | 331 | 346 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | PRINTS | Haem peroxidase superfamily signature | 206 | 223 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | PRINTS | Haem peroxidase superfamily signature | 271 | 286 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | PRINTS | Haem peroxidase superfamily signature | 145 | 159 | IPR002016 | GO:0004601|GO:0006979|GO:0020037 | |
Lsi05g01275 | 409 | Gene3D | - | 117 | 409 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g01427 | Lsi-Chr3:25241352 | Lsi05g01275 | Lsi-Chr5:20482664 | 1.52E-82 | dispersed | |
Lsi04g01357 | Lsi-Chr4:21304352 | Lsi05g01275 | Lsi-Chr5:20482664 | 1.69E-84 | dispersed | |
Lsi05g01275 | Lsi-Chr5:20482664 | Lsi08g01301 | Lsi-Chr8:21380032 | 7.53E-127 | dispersed | |
Lsi06g01521 | Lsi-Chr6:25632662 | Lsi05g01275 | Lsi-Chr5:20482664 | 1.28E-76 | dispersed | |
Lsi05g01275 | Lsi-Chr5:20482664 | Lsi10g00150 | Lsi-Chr10:2437499 | 8.84E-97 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g01275 | K00430 | - | csv:101210306 | 579.326 |