Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01275 ATGATTCAACAACTGGGAAAAGTGAATGCTTGTTTTCTTGACGTCCAAACAGCGACAAAGAAAATAGTTGAGGTGAGGGAATTTTGCGAGAAACAACTTCGAGAACGTCCAACTCCACAAGCAAAGGAGGATACGGGAGGGCCAGACACTATGATAAATGGTTGCTTAACGAGTTCCCAAAGTTTGAAAAGAGAGAAGGTGGGCAGTACAGCTGATCTCTTCTTCCACAGGAGTAGCTTGAAAAACATACCAAGTGAGCAACTTTTTATGTTCCAAACAATGGCAAAAAATGCATTTCTCTTGTTTCTAATGATGATGGTTTGTCTGTCGGAAGGAGTTCTTGATAGCCATTATTACTCAAAAACATGTCCCAATGCAGAAAAAATCATCCTCCAAACCGTCTATAATGCTTCCATTAATGACCCCAAAGTCCCTGCTCGTCTTCTCAGGCTCTTCTTCCATGATTGTTTCATAAGGGGATGTGATGCATCGGTGTTGTTAGACTCGACATCAGATAATCAGGCAGAGAAAGATGCACCTCCAAACATCTCGCTAAGGTCATTCTATGTGATCGACGAGGCCAAAGCCAAGCTTGAAAGTGCATGCCCACATACTGTTTCTTGTGCTGATATTGTCGCCATTGCTGCTAGAGATGTAGTAACTTTGTCTGGAGGCCCATATTGGAGTGTACTCAAAGGAAGGAAAGATGGGAAGATTTCCAAGGCTTCTGAGGCCATCAACTTGCCAGCTCCAACTTTCAATGTGTCTCAACTCATCCATAGCTTTGCAAACAGAGGATTAGAAGTTAAGGATTTGGTTGCTCTATCTGGGGCTCACACACTTGGATTCTCACATTGTTCTTCCTTTCAATCTAGACTTCGCAACTTCAGCTCGATTCATGAAATTGATCCTACTTTGGAATCTGGGTTTGCCCAAATTCTAAGAAACAAATGTCCAAAACCAAATTTGGACAAAAATGCTGGACAGTTCTTGGACCCAACTTCCTCAACCTTTGACAATGTGTATTACAAGAGACTGTTGGAAGGAAAGGGTGTGTTTGGTTCAGATCAAGCTTTGTTTGCTGATTCTAGAACTAGAGGGCTTGTTAGGTTGTTTGCTCAAGATCAGAACTCGTTCTTTAAGGAGTTTGCAGCTTCAATGGTGAATTTGGGTAATGTTGGGGTAAGTCAAAATGGAAATGTCAGACTCAATTGCCGGGTGGTGAACTGA 1230 42.2 MIQQLGKVNACFLDVQTATKKIVEVREFCEKQLRERPTPQAKEDTGGPDTMINGCLTSSQSLKREKVGSTADLFFHRSSLKNIPSEQLFMFQTMAKNAFLLFLMMMVCLSEGVLDSHYYSKTCPNAEKIILQTVYNASINDPKVPARLLRLFFHDCFIRGCDASVLLDSTSDNQAEKDAPPNISLRSFYVIDEAKAKLESACPHTVSCADIVAIAARDVVTLSGGPYWSVLKGRKDGKISKASEAINLPAPTFNVSQLIHSFANRGLEVKDLVALSGAHTLGFSHCSSFQSRLRNFSSIHEIDPTLESGFAQILRNKCPKPNLDKNAGQFLDPTSSTFDNVYYKRLLEGKGVFGSDQALFADSRTRGLVRLFAQDQNSFFKEFAASMVNLGNVGVSQNGNVRLNCRVVN 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20482664 20485880 + Lsi05G012750.1 Lsi05g01275 663767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01275 409 PANTHER PEROXIDASE 66 99 408 - -
Lsi05g01275 409 SUPERFAMILY Heme-dependent peroxidases 114 409 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 CDD secretory_peroxidase 114 408 IPR033905 GO:0004601|GO:0042744
Lsi05g01275 409 PRINTS Plant peroxidase signature 147 167 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 PRINTS Plant peroxidase signature 329 344 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 PRINTS Plant peroxidase signature 345 362 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 PRINTS Plant peroxidase signature 385 398 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 PRINTS Plant peroxidase signature 123 142 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 PRINTS Plant peroxidase signature 186 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 PRINTS Plant peroxidase signature 205 215 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 PRINTS Plant peroxidase signature 270 282 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 PRINTS Plant peroxidase signature 224 239 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 Pfam Peroxidase 136 375 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 PANTHER PEROXIDASE 25-RELATED 99 408 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 Gene3D Peroxidase, domain 2 249 390 - -
Lsi05g01275 409 ProSiteProfiles Plant heme peroxidase family profile. 113 409 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 ProSitePatterns Peroxidases proximal heme-ligand signature. 271 281 IPR019793 -
Lsi05g01275 409 PRINTS Haem peroxidase superfamily signature 224 236 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 PRINTS Haem peroxidase superfamily signature 331 346 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 PRINTS Haem peroxidase superfamily signature 206 223 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 PRINTS Haem peroxidase superfamily signature 271 286 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 PRINTS Haem peroxidase superfamily signature 145 159 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi05g01275 409 Gene3D - 117 409 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g01427 Lsi-Chr3:25241352 Lsi05g01275 Lsi-Chr5:20482664 1.52E-82 dispersed
Lsi04g01357 Lsi-Chr4:21304352 Lsi05g01275 Lsi-Chr5:20482664 1.69E-84 dispersed
Lsi05g01275 Lsi-Chr5:20482664 Lsi08g01301 Lsi-Chr8:21380032 7.53E-127 dispersed
Lsi06g01521 Lsi-Chr6:25632662 Lsi05g01275 Lsi-Chr5:20482664 1.28E-76 dispersed
Lsi05g01275 Lsi-Chr5:20482664 Lsi10g00150 Lsi-Chr10:2437499 8.84E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01275 K00430 - csv:101210306 579.326