Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01277 ATGGTGAGAGGAAAAGTAGAAATGAAAAGGATAGAAAATGCGACAAGTCGACAGGTAACATTCTCAAAGCGTAGAAATGGACTGTTGAAGAAGGCGTATGAACTATCTGTGCTGTGTGATGCTGAAGTTGCAGTCATCATTTTCTCACAAAAAGGCCGTCTCTATGAATTTGCAAGCTCTGAATTTTCTGGAAATTTTAATCATTTGCCCCCACCTCTAAGGTTCCATAGGAGTAAATATAAGCATGATAGGGTTTATAGGATGCCGAGAATTGTAGAGCGCTATCGCAAATGTTCAAGAGATGGGAAAAACTGTACCAAATTTGATAGACAACTACAATTACAGCAATTAAGGCTTGAAGCTGAAAGCATTAATAAGAAGATGGAGTTGATGCAACTTTCTCACAGGAAGCTGTTAGGATATGGACTGGATTCTTGTTCTCTTGATGAACTTCAACTACTTGATGCTCAGCTTCAACGAAGCCTGTTCCAAATTAGAGCCAGAAAGGCTCAGCTATACAAGGAGCAGATACAACAATTACAAGAAAAGGAAAGACTCCTTTCAGAAGAAAACAGGAAATTGTCTTTAAAGATGGAGCTAAAACTAAGTTGGATGGGCCTAGAACGTCTGAAGCATAGTAGTGATAAACATGGAAGTGATGGTGGTGAGATGTTCTTTTTTGGTTTGAACATATCTTGGAGGCAAATCCGGTCGCCCACCGTTAAAGTCCGCAACTTGTCCAGCGCTTGCCCCTCAACGCGGTTAAAGGAGTCAAAAGAGTTTCTTGCACGCTACCTTCTTCTTCTCGCCGCAGCTCACGGTGTTGCCACCACGTACGGCTGCCGGAGAAGCCCTAGTTCGGCAGTCGACACCCAATTGGCAATTTGA 888 42.57 MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEFSGNFNHLPPPLRFHRSKYKHDRVYRMPRIVERYRKCSRDGKNCTKFDRQLQLQQLRLEAESINKKMELMQLSHRKLLGYGLDSCSLDELQLLDAQLQRSLFQIRARKAQLYKEQIQQLQEKERLLSEENRKLSLKMELKLSWMGLERLKHSSDKHGSDGGEMFFFGLNISWRQIRSPTVKVRNLSSACPSTRLKESKEFLARYLLLLAAAHGVATTYGCRRSPSSAVDTQLAI 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20508941 20517349 + Lsi05G012770.1 Lsi05g01277 663769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01277 295 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Lsi05g01277 295 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi05g01277 295 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi05g01277 295 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi05g01277 295 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lsi05g01277 295 Coils Coil 114 134 - -
Lsi05g01277 295 Gene3D - 14 116 IPR036879 GO:0003677|GO:0046983
Lsi05g01277 295 Coils Coil 170 197 - -
Lsi05g01277 295 PANTHER MADS-BOX PROTEIN SOC1 87 209 - -
Lsi05g01277 295 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lsi05g01277 295 ProSiteProfiles K-box domain profile. 114 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi05g01277 295 Pfam K-box region 112 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi05g01277 295 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lsi05g01277 295 CDD MADS_MEF2_like 3 104 IPR033896 GO:0000977|GO:0045944
Lsi05g01277 295 PANTHER MADS BOX PROTEIN 87 209 - -
Lsi05g01277 295 PANTHER MADS BOX PROTEIN 1 63 - -
Lsi05g01277 295 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lsi05g01277 295 PANTHER MADS-BOX PROTEIN SOC1 1 63 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01277 Lsi-Chr5:20508941 Lsi09g01914 Lsi-Chr9:27979417 7.06E-46 dispersed
Lsi05g01277 Lsi-Chr5:20508941 Lsi05g01991 Lsi-Chr5:26983362 6.29E-51 wgd
Lsi05g01277 Lsi-Chr5:20508941 Lsi09g00321 Lsi-Chr9:3331222 4.58E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25362 PF01486 K-box 2.10E-20 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01277 - - csv:101211542 261.536