Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01277 ATGGTGAGAGGAAAAGTAGAAATGAAAAGGATAGAAAATGCGACAAGTCGACAGGTAACATTCTCAAAGCGTAGAAATGGACTGTTGAAGAAGGCGTATGAACTATCTGTGCTGTGTGATGCTGAAGTTGCAGTCATCATTTTCTCACAAAAAGGCCGTCTCTATGAATTTGCAAGCTCTGAATTTTCTGGAAATTTTAATCATTTGCCCCCACCTCTAAGGTTCCATAGGAGTAAATATAAGCATGATAGGGTTTATAGGATGCCGAGAATTGTAGAGCGCTATCGCAAATGTTCAAGAGATGGGAAAAACTGTACCAAATTTGATAGACAACTACAATTACAGCAATTAAGGCTTGAAGCTGAAAGCATTAATAAGAAGATGGAGTTGATGCAACTTTCTCACAGGAAGCTGTTAGGATATGGACTGGATTCTTGTTCTCTTGATGAACTTCAACTACTTGATGCTCAGCTTCAACGAAGCCTGTTCCAAATTAGAGCCAGAAAGGCTCAGCTATACAAGGAGCAGATACAACAATTACAAGAAAAGGAAAGACTCCTTTCAGAAGAAAACAGGAAATTGTCTTTAAAGATGGAGCTAAAACTAAGTTGGATGGGCCTAGAACGTCTGAAGCATAGTAGTGATAAACATGGAAGTGATGGTGGTGAGATGTTCTTTTTTGGTTTGAACATATCTTGGAGGCAAATCCGGTCGCCCACCGTTAAAGTCCGCAACTTGTCCAGCGCTTGCCCCTCAACGCGGTTAAAGGAGTCAAAAGAGTTTCTTGCACGCTACCTTCTTCTTCTCGCCGCAGCTCACGGTGTTGCCACCACGTACGGCTGCCGGAGAAGCCCTAGTTCGGCAGTCGACACCCAATTGGCAATTTGA 888 42.57 MVRGKVEMKRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFASSEFSGNFNHLPPPLRFHRSKYKHDRVYRMPRIVERYRKCSRDGKNCTKFDRQLQLQQLRLEAESINKKMELMQLSHRKLLGYGLDSCSLDELQLLDAQLQRSLFQIRARKAQLYKEQIQQLQEKERLLSEENRKLSLKMELKLSWMGLERLKHSSDKHGSDGGEMFFFGLNISWRQIRSPTVKVRNLSSACPSTRLKESKEFLARYLLLLAAAHGVATTYGCRRSPSSAVDTQLAI 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20508941 20517349 + Lsi05G012770.1 Lsi05g01277 663769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01277 295 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Lsi05g01277 295 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi05g01277 295 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi05g01277 295 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi05g01277 295 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lsi05g01277 295 Coils Coil 114 134 - -
Lsi05g01277 295 Gene3D - 14 116 IPR036879 GO:0003677|GO:0046983
Lsi05g01277 295 Coils Coil 170 197 - -
Lsi05g01277 295 PANTHER MADS-BOX PROTEIN SOC1 87 209 - -
Lsi05g01277 295 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lsi05g01277 295 ProSiteProfiles K-box domain profile. 114 208 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi05g01277 295 Pfam K-box region 112 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi05g01277 295 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lsi05g01277 295 CDD MADS_MEF2_like 3 104 IPR033896 GO:0000977|GO:0045944
Lsi05g01277 295 PANTHER MADS BOX PROTEIN 87 209 - -
Lsi05g01277 295 PANTHER MADS BOX PROTEIN 1 63 - -
Lsi05g01277 295 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lsi05g01277 295 PANTHER MADS-BOX PROTEIN SOC1 1 63 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01277 - - - csv:101211542 261.536
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01277 Lsi-Chr5:20508941 Lsi09g01914 Lsi-Chr9:27979417 7.06E-46 dispersed
Lsi05g01277 Lsi-Chr5:20508941 Lsi05g01991 Lsi-Chr5:26983362 6.29E-51 wgd
Lsi05g01277 Lsi-Chr5:20508941 Lsi09g00321 Lsi-Chr9:3331222 4.58E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g549 . Blo15g00152 Bda05g00042 . . . Bma10g01180 . . . Cma02g01025 Cma15g01396 . Car15g01258 . Cpe05g00693 . Bhi01g01386 . . Lac11g2156 . Mch10g0200 . Cla01g00524 Cam01g0544 Cec01g0537 Cco01g0562 Clacu01g0543 Cmu01g0516 Cre09g1993 . . Cone14ag0123 Cone15ag0131 Lsi05g01277 Csa05g00560 Chy09g00944 Cme06g00949 Blo07g00444 . Bda06g00660 Bda15g00745 . . Bma08g00348 . . Cmo02g01041 Cmo15g01463 . . . . . Cpe13g00187 Bhi12g00330 . . . . . . Cla05g00836 Cam05g0921 Cec05g0925 Cco05g0928 Clacu05g0909 Cmu05g0867 Cre05g0953 . Csa03g01665 Chy06g00898 Cme09g01472
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi08g00034 . 1 226 MADS-box Gene Family AT3G58780 59.5 7.5e-70 260.8
Lsi02g00845 CCT 28 222 MADS-box Gene Family AT3G58780 60.4 4.1e-60 228.4
Lsi10g01545 . 1 98 MADS-box Gene Family AT3G58780 80.6 4.4e-38 155.2
Lsi07g00959 . 1 221 MADS-box Gene Family AT1G26310 52.2 3.6e-56 215.3
Lsi08g00907 . 1 163 MADS-box Gene Family AT1G26310 57.4 5.3e-47 184.9
Lsi07g00957 . 1 167 MADS-box Gene Family AT1G26310 55.3 1.9e-41 166.4
Lsi09g01915 CCT 5 146 MADS-box Gene Family AT1G26310 56.4 5.8e-38 154.8
Lsi08g00034 . 1 227 MADS-box Gene Family AT4G09960 73.5 1.4e-86 316.2
Lsi02g00845 CCT 30 212 MADS-box Gene Family AT4G09960 57.3 3.6e-55 211.8
Lsi07g00957 . 1 169 MADS-box Gene Family AT3G61120 54.4 1.2e-40 163.7
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G11880 57.7 9.2e-56 213.8
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G11880 52.5 1.4e-43 173.3
Lsi05g01277 . 1 201 MADS-box Gene Family AT4G11880 51.0 1.6e-39 159.8
Lsi03g01188 . 1 208 MADS-box Gene Family AT5G13790 50.4 3.1e-45 179.1
Lsi04g02291 . 1 207 MADS-box Gene Family AT2G22630 58.4 6.3e-52 201.1
Lsi01g00825 . 3 165 MADS-box Gene Family AT2G22630 58.3 5.4e-43 171.4
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G22950 61.4 4.6e-60 228.0
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G22950 50.7 8.5e-46 180.6
Lsi07g00957 . 1 254 MADS-box Gene Family AT5G15800 72.7 3.0e-98 355.1
Lsi07g00959 . 1 161 MADS-box Gene Family AT5G15800 52.0 2.3e-37 152.9
Lsi05g01991 CCT 1 159 MADS-box Gene Family AT2G45660 69.8 1.2e-52 203.0
Lsi09g00321 . 5 163 MADS-box Gene Family AT2G45660 65.4 4.6e-49 191.0
Lsi09g01914 . 1 199 MADS-box Gene Family AT2G45660 55.3 2.1e-46 182.2
Lsi05g01277 . 1 183 MADS-box Gene Family AT2G45660 51.4 1.2e-38 156.4
Lsi04g02291 . 1 218 MADS-box Gene Family AT4G37940 62.1 1.3e-59 226.5
Lsi01g00825 . 3 128 MADS-box Gene Family AT4G37940 69.0 1.1e-42 170.2
Lsi08g01026 . 38 183 MADS-box Gene Family AT2G22540 63.7 2.3e-44 176.0
Lsi08g01026 . 38 181 MADS-box Gene Family AT4G24540 60.3 9.8e-42 167.2
Lsi07g00957 . 1 175 MADS-box Gene Family AT2G03710 67.0 1.3e-58 223.0
Lsi02g00138 . 1 197 MADS-box Gene Family AT2G03710 54.3 7.0e-49 190.7
Lsi07g00957 . 1 177 MADS-box Gene Family AT3G02310 84.3 4.5e-78 287.7
Lsi02g00138 . 1 196 MADS-box Gene Family AT3G02310 58.2 7.8e-54 207.2
Lsi09g01915 CCT 5 142 MADS-box Gene Family AT3G02310 58.6 6.4e-40 161.0
Lsi07g00959 . 1 158 MADS-box Gene Family AT3G02310 53.8 1.1e-36 150.2
Lsi05g01991 CCT 1 144 MADS-box Gene Family AT5G62165 62.5 6.8e-42 167.2
Lsi09g00321 . 5 158 MADS-box Gene Family AT5G62165 58.4 8.9e-42 166.8
Lsi05g01277 . 1 172 MADS-box Gene Family AT5G62165 54.1 1.5e-41 166.0
Lsi04g02291 . 1 141 MADS-box Gene Family AT2G14210 74.6 1.7e-52 203.0
Lsi01g00825 . 3 128 MADS-box Gene Family AT2G14210 63.8 1.2e-37 153.7
Lsi08g00034 . 1 183 MADS-box Gene Family AT2G42830 70.8 2.0e-67 252.7
Lsi02g00845 CCT 30 186 MADS-box Gene Family AT2G42830 72.1 9.0e-60 227.3
Lsi10g01545 . 1 98 MADS-box Gene Family AT2G42830 78.6 1.6e-37 153.3
Lsi09g01915 CCT 5 260 MADS-box Gene Family AT2G45650 54.6 3.9e-71 265.0
Lsi05g01280 . 1 181 MADS-box Gene Family AT2G45650 53.6 5.0e-42 168.3
Lsi08g00034 . 1 168 MADS-box Gene Family AT2G45650 51.8 3.4e-38 155.6
Lsi01g00165 . 506 622 MADS-box Gene Family AT1G29960 54.7 9.6e-39 156.4
Lsi09g00321 . 5 151 MADS-box Gene Family AT5G51870 53.7 6.4e-37 151.0
Lsi07g00959 . 1 189 MADS-box Gene Family AT3G30260 55.1 5.3e-44 174.9
Lsi07g00957 . 1 253 MADS-box Gene Family AT1G24260 58.0 1.0e-68 256.9
Lsi09g01728 . 1 180 MADS-box Gene Family AT1G24260 63.8 1.0e-52 203.8
Lsi07g00959 . 1 161 MADS-box Gene Family AT1G24260 52.1 1.4e-38 156.8
Lsi04g01716 . 1 243 MADS-box Gene Family AT3G54340 57.6 4.9e-68 254.6
Lsi04g01838 . 23 128 MADS-box Gene Family AT5G20240 74.5 3.3e-41 164.9
Lsi04g01838 . 23 128 MADS-box Gene Family AT5G20240 74.5 3.3e-41 164.9
Lsi04g01716 . 1 243 MADS-box Gene Family AT3G54340 57.6 4.9e-68 254.6
Lsi08g00034 . 1 226 MADS-box Gene Family AT3G58780 59.5 7.5e-70 260.8
Lsi02g00845 CCT 28 222 MADS-box Gene Family AT3G58780 60.4 4.1e-60 228.4
Lsi10g01545 . 1 98 MADS-box Gene Family AT3G58780 80.6 4.4e-38 155.2
Lsi07g00957 . 1 254 MADS-box Gene Family AT5G15800 72.7 3.0e-98 355.1
Lsi07g00959 . 1 161 MADS-box Gene Family AT5G15800 52.0 2.3e-37 152.9
Lsi07g00957 . 1 175 MADS-box Gene Family AT2G03710 67.0 1.3e-58 223.0
Lsi02g00138 . 1 197 MADS-box Gene Family AT2G03710 54.3 7.0e-49 190.7
Lsi07g00957 . 1 177 MADS-box Gene Family AT3G02310 84.3 4.5e-78 287.7
Lsi02g00138 . 1 196 MADS-box Gene Family AT3G02310 58.2 7.8e-54 207.2
Lsi09g01915 CCT 5 142 MADS-box Gene Family AT3G02310 58.6 6.4e-40 161.0
Lsi07g00959 . 1 158 MADS-box Gene Family AT3G02310 53.8 1.1e-36 150.2
Lsi08g00034 . 1 183 MADS-box Gene Family AT2G42830 70.8 2.0e-67 252.7
Lsi02g00845 CCT 30 186 MADS-box Gene Family AT2G42830 72.1 9.0e-60 227.3
Lsi10g01545 . 1 98 MADS-box Gene Family AT2G42830 78.6 1.6e-37 153.3
Lsi09g01915 CCT 5 260 MADS-box Gene Family AT2G45650 54.6 3.9e-71 265.0
Lsi05g01280 . 1 181 MADS-box Gene Family AT2G45650 53.6 5.0e-42 168.3
Lsi08g00034 . 1 168 MADS-box Gene Family AT2G45650 51.8 3.4e-38 155.6
Lsi07g00957 . 1 253 MADS-box Gene Family AT1G24260 58.0 1.0e-68 256.9
Lsi09g01728 . 1 180 MADS-box Gene Family AT1G24260 63.8 1.0e-52 203.8
Lsi07g00959 . 1 161 MADS-box Gene Family AT1G24260 52.1 1.4e-38 156.8
Lsi07g00959 . 1 221 MADS-box Gene Family AT1G26310 52.2 3.6e-56 215.3
Lsi08g00907 . 1 163 MADS-box Gene Family AT1G26310 57.4 5.3e-47 184.9
Lsi07g00957 . 1 167 MADS-box Gene Family AT1G26310 55.3 1.9e-41 166.4
Lsi09g01915 CCT 5 146 MADS-box Gene Family AT1G26310 56.4 5.8e-38 154.8
Lsi08g00034 . 1 227 MADS-box Gene Family AT4G09960 73.5 1.4e-86 316.2
Lsi02g00845 CCT 30 212 MADS-box Gene Family AT4G09960 57.3 3.6e-55 211.8
Lsi07g00957 . 1 169 MADS-box Gene Family AT3G61120 54.4 1.2e-40 163.7
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G11880 57.7 9.2e-56 213.8
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G11880 52.5 1.4e-43 173.3
Lsi05g01277 . 1 201 MADS-box Gene Family AT4G11880 51.0 1.6e-39 159.8
Lsi03g01188 . 1 208 MADS-box Gene Family AT5G13790 50.4 3.1e-45 179.1
Lsi04g02291 . 1 207 MADS-box Gene Family AT2G22630 58.4 6.3e-52 201.1
Lsi01g00825 . 3 165 MADS-box Gene Family AT2G22630 58.3 5.4e-43 171.4
Lsi09g00321 . 5 216 MADS-box Gene Family AT4G22950 61.4 4.6e-60 228.0
Lsi05g01991 CCT 1 186 MADS-box Gene Family AT4G22950 50.7 8.5e-46 180.6
Lsi05g01991 CCT 1 159 MADS-box Gene Family AT2G45660 69.8 1.2e-52 203.0
Lsi09g00321 . 5 163 MADS-box Gene Family AT2G45660 65.4 4.6e-49 191.0
Lsi09g01914 . 1 199 MADS-box Gene Family AT2G45660 55.3 2.1e-46 182.2
Lsi05g01277 . 1 183 MADS-box Gene Family AT2G45660 51.4 1.2e-38 156.4
Lsi04g02291 . 1 218 MADS-box Gene Family AT4G37940 62.1 1.3e-59 226.5
Lsi01g00825 . 3 128 MADS-box Gene Family AT4G37940 69.0 1.1e-42 170.2
Lsi08g01026 . 38 183 MADS-box Gene Family AT2G22540 63.7 2.3e-44 176.0
Lsi08g01026 . 38 181 MADS-box Gene Family AT4G24540 60.3 9.8e-42 167.2
Lsi05g01991 CCT 1 144 MADS-box Gene Family AT5G62165 62.5 6.8e-42 167.2
Lsi09g00321 . 5 158 MADS-box Gene Family AT5G62165 58.4 8.9e-42 166.8
Lsi05g01277 . 1 172 MADS-box Gene Family AT5G62165 54.1 1.5e-41 166.0
Lsi04g02291 . 1 141 MADS-box Gene Family AT2G14210 74.6 1.7e-52 203.0
Lsi01g00825 . 3 128 MADS-box Gene Family AT2G14210 63.8 1.2e-37 153.7
Lsi01g00165 . 506 622 MADS-box Gene Family AT1G29960 54.7 9.6e-39 156.4
Lsi09g00321 . 5 151 MADS-box Gene Family AT5G51870 53.7 6.4e-37 151.0
Lsi07g00959 . 1 189 MADS-box Gene Family AT3G30260 55.1 5.3e-44 174.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001118 4 2 3 6 3 2 3 2 2 1 2 2 3 3 2 2 2 2 3 2 2 2 2 1 3 1 2 6 5 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25362 PF01486 K-box 2.10E-20 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01277 Lsi_Chr05 FPKM 0.0 0.0 0.0 0.0 0.240051 0.0 0.0 0.0 0.0 0.0