Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01280 ATGGGAAGGGGAAAAGTAGTGCTTGAGAGAATAGAGAACAAAGTGAATCGTCAAGTTACCTTCTCAAAACGAAGAAATGGGTTATTGAAGAAGGCTTGTGAGCTCTCTGTGCTTTGTGATGTTGATGTTGCTCTTATCATCTTCTCTACTCGTGGAAAGCTCTTTGAATTTGGCAGCACTGACATGAACAAAATCCTTGAGAAGTATCACCAGCGATGTTACAGCTCTGGATCAAGCACCAATCTTGATGAGAGTGACATACAGATAGAGGAGGTGTCAAAGCTCAGAGCCAAATATGAATCTCTTCAGCGTTCCCATAGGAACTTTCTTGGAGAAGAACTTGAACCACTGAACCTAAAAGAGTTGCATAATCTTGAGAAGCAGTTGGACAAAACTCTTTCACACGCTAGACAGCGGAAGTGTCCGGACCAGCTTACGCGCACCTCGACTAATTTCACGGGACAACCCACCCGACCTTACAACAGGCGGGAGCAGGACCTTGGAGATCAAAATACTCAGCTCAAGTCAAAGCTTGAAGAAGAACAACAATGTATGCAAGAAAAGGAAGGTGGCGAGGAAGATCCAATGAATTACGAGGTTGTTGGAGCTGACCAAAACATGAACACCACCAGGTACTTTGATCCCCAAGAAGAAGAAGGCAGGGCCATGATAGGAGCTGGGAGTAATGACTTAATCCCAGATTGGCTACTTTGA 714 44.68 MGRGKVVLERIENKVNRQVTFSKRRNGLLKKACELSVLCDVDVALIIFSTRGKLFEFGSTDMNKILEKYHQRCYSSGSSTNLDESDIQIEEVSKLRAKYESLQRSHRNFLGEELEPLNLKELHNLEKQLDKTLSHARQRKCPDQLTRTSTNFTGQPTRPYNRREQDLGDQNTQLKSKLEEEQQCMQEKEGGEEDPMNYEVVGADQNMNTTRYFDPQEEEGRAMIGAGSNDLIPDWLL 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20545030 20552213 - Lsi05G012800.1 Lsi05g01280 663772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01280 237 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 198 - -
Lsi05g01280 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi05g01280 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lsi05g01280 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi05g01280 237 ProSiteProfiles K-box domain profile. 85 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi05g01280 237 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lsi05g01280 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi05g01280 237 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Lsi05g01280 237 Coils Coil 119 139 - -
Lsi05g01280 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lsi05g01280 237 MobiDBLite consensus disorder prediction 162 195 - -
Lsi05g01280 237 MobiDBLite consensus disorder prediction 143 160 - -
Lsi05g01280 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 198 - -
Lsi05g01280 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lsi05g01280 237 Pfam K-box region 89 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi05g01280 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lsi05g01280 237 MobiDBLite consensus disorder prediction 133 196 - -
Lsi05g01280 237 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01280 Lsi-Chr5:20545030 Lsi09g01915 Lsi-Chr9:27992713 5.93E-54 dispersed
Lsi05g01280 Lsi-Chr5:20545030 Lsi07g00957 Lsi-Chr7:12109274 6.16E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25363 PF01486 K-box 9.70E-20 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01280 K09264 - csv:101212022 342.428