Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01287 ATGATTCCGATGACGAAGGGTTACAGTAGAATGCCAAGCGAAGATGATGAAGATTCGCCGGCCAAATGCCGAGAGCGCCGGCGCCGTAGAATAGAGATGAGACGGTTAGCAACAGTATCGTCGGCGAATCCCTCGCCCTCCCCCACTCACCCCCGGAAAGAGAACCAAACTGGTAGCTCCGGTTTTGAGAAAAAGCGTGTTCGGAAGACGGACGACGACGGTAATCCGAAGATTTCATCGTCTTCGTCATCGGAGGAGGACGTGAAGACTGTAAGAGCTTCCCCATCGGAACCTCAGCCGGTTTTCGGGATGATGTCGGTGTCTGGGAGGTCACGTGAGATGGAGGATGCAGTATCGGTGAGCACGTGCGTTCTAGGTCCAGAAAATTTCCGACGGGAACTTGTGCATTTCTTTGCCGTCTACGATGGACATGGAGGCCCTCACGTGGCAGCGCTATGTAGGGAGAAGATGCACGTGTTCGTACAGGAGGAATTTTCGCGCGTGATTTGCACGCGTAAAGGAGTGGAGAGTGGCGGCGGTGGAAGCAGCATGGGGGAGGAGGTTAAGCTGCTGCTGGAGGAGGAGGAGGAGGAGGAGGCGACTTGGAGAAGAGTGATGCGGCAGAGCTTTAAGAGAATGGACGAAGTGGCACTCAGTACTTGTGCCTGTGGGAGCGTCGGAGGCCAGTGTGGGTGCCATCCGATGGAGGTGGCTCTCGGCGGCTCCACCGCCATCGTCGCCGTGCTCACGCCGGATCACATAATCGTCGCCAACTGCGGCGATTCACGCGCCGTCCTTTGCCGAGGAGGAAGGGCCATTCCGCTTTCTAATGATCACAAGCCTGATAGAAATGATGAACTAGCAAGGATCGAAGCTGCTGGAGGACGGGTGATTTTCGTAAATGGAGCTCGGGTTGAAGGAATCCTTGCAATGTCCCGGGCAATAGGGGACAAGTATCTGAAGTCAGTTGTAATATCAGAGCCTGAAATTACTTTCACCAAAAGAGAATCAGATGATGAATGTTTAATACTTGCAAGTGATGGATTGTGGGATGTTCTTTCGAGTGAGTTGGCTTGCGAGGTAGCTCGTGAATGTCTGCAAGAAGGAGCGGCGGCTGCTGCTGCTACTACAATAGACCTCAATGTTGCGCCTCAAATTGAAGAAGAAGGGGCTGGAACCTCATATCCCTCTCGAAGTGCATTGGCTGCTGCATTGCTTACTCGTCTTGCTTTAGGGCGAAAAAGCACAGACAACATCAGTGTCATAGTTATTGATCTAAAGAGAAGCTGA 1290 52.79 MIPMTKGYSRMPSEDDEDSPAKCRERRRRRIEMRRLATVSSANPSPSPTHPRKENQTGSSGFEKKRVRKTDDDGNPKISSSSSSEEDVKTVRASPSEPQPVFGMMSVSGRSREMEDAVSVSTCVLGPENFRRELVHFFAVYDGHGGPHVAALCREKMHVFVQEEFSRVICTRKGVESGGGGSSMGEEVKLLLEEEEEEEATWRRVMRQSFKRMDEVALSTCACGSVGGQCGCHPMEVALGGSTAIVAVLTPDHIIVANCGDSRAVLCRGGRAIPLSNDHKPDRNDELARIEAAGGRVIFVNGARVEGILAMSRAIGDKYLKSVVISEPEITFTKRESDDECLILASDGLWDVLSSELACEVARECLQEGAAAAAATTIDLNVAPQIEEEGAGTSYPSRSALAAALLTRLALGRKSTDNISVIVIDLKRS 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20670836 20678143 - Lsi05G012870.1 Lsi05g01287 663779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01287 429 SMART PP2C_4 91 424 IPR001932 -
Lsi05g01287 429 ProSitePatterns PPM-type phosphatase domain signature. 137 145 IPR000222 GO:0043169
Lsi05g01287 429 ProSiteProfiles PPM-type phosphatase domain profile. 101 426 IPR001932 -
Lsi05g01287 429 MobiDBLite consensus disorder prediction 38 56 - -
Lsi05g01287 429 MobiDBLite consensus disorder prediction 1 102 - -
Lsi05g01287 429 SUPERFAMILY PP2C-like 95 427 IPR036457 -
Lsi05g01287 429 Gene3D - 90 429 IPR036457 -
Lsi05g01287 429 CDD PP2Cc 101 426 IPR001932 -
Lsi05g01287 429 Pfam Protein phosphatase 2C 102 384 IPR001932 -
Lsi05g01287 429 MobiDBLite consensus disorder prediction 57 75 - -
Lsi05g01287 429 MobiDBLite consensus disorder prediction 10 26 - -
Lsi05g01287 429 PANTHER PROTEIN PHOSPHATASE 2C 75-RELATED 52 428 - -
Lsi05g01287 429 PANTHER ALPHABET, ISOFORM E-RELATED 52 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01287 Lsi-Chr5:20670836 Lsi07g00587 Lsi-Chr7:6239778 1.87E-75 dispersed
Lsi05g01287 Lsi-Chr5:20670836 Lsi02g01331 Lsi-Chr2:17811663 3.24E-93 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01287 K14497 - csv:101206634 673.7