Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01289 ATGGCTGATACTCCTCTCAAATGGCTCTGTTTGCTGCTCTTTTTTCACTGTTTCCTTCTTTCAACCGCTCAGTTTTTTAAAACTTATGTTGTTCAAATGGACAAGTCTGCAATGCCGGACTCATTTACGGATCATCTTCATTGGTATTCCACAGTACTAAGCAATGTGGTTGTTAATCTTGAGAGAGAAGGTAGTGGGGGAGGAGGTGAAGAGAGGATTATTTACAGTTACCATAATGTTTTCCATGGAATTGCAGCTCGATTGAGTGAACAAGAGGCTGAGAAGCTCGAGGAAGAAGATGGGGTATTGGCCATTTTTCCTGAGACGAAGTACGAGCTTCATACTACCAGAAGCCCCAAATTTCTTGGGCTTGAACCAGCTGACAGCAACAGCGCCTGGTCTCAGCAAATTGCAGACCATGATGTGATTGTTGGAGTTTTGGACACTGGGATTTGGCCGGAGAGTGACAGCTTCAATGACGCCGGAATGTCGCCCGTGCCGGCGCATTGGAAAGGGGAATGCGAAACAGGGCGAGGGTTCACGAAACAGAATTGTAACAGAAAGATCGTTGGTGCCAGAGTGTTCTACCATGGGTATCAAGCTGCAACTGGGAAATTTAACGAACAGTTGGAGTACAAATCGCCGAGGGATCAAGATGGGCATGGAACTCACACCGCAGCCACCGTCGCTGGCTCTCCGGTGGCCGGCGCGAGCCTCCTTGGTTATGCATATGGAACAGCCAGAGGAATGGCGCCCGGAGCTAGAATTGCGGCTTACAAAGTTTGTTGGGTTGGTGGCTGCTTTAGCTCCGACATTTTGTCGGCAGTTGACAGAGCTGTGGCCGACGGAGTAAATGTTCTGTCCATCTCTTTGGGAGGTGGGGTCTCTTCTTACTATCGCGATAGTCTCTCCGTTGCAGCATTTGGAGCAATGGAGATGGGCGTCTTTGTCTCCTGCTCGGCCGGAAATGGAGGCCCGGACCCTGTCAGTCTCACAAATGTATCACCATGGATAACCACTGTCGGCGCCAGCACAATGGACAGAGATTTCCCGGCCATTGTCAAGCTCGGCGATGGCAGAACAGTCACCGGCGTTTCACTTTACAGAGGAAGAATCACAATTCCAGAAAACAAACAATTCCCAGTTGTATACATGGGGAGTAACTCAAGCAGCCCCGATCCGAGCTCGCTGTGTTTGGAAGGAACTTTAGATCCCCATTTTGTGGCCGGAAAAATTGTGATATGCGATCGCGGAATTAGCCCTCGGGTTCAGAAGGGTGTGGTGGTGAAAAATGCAGGTGGGGTTGGGATGATTCTGTCGAACACGGCGGCGAATGGGGAAGAACTTGTTGCTGATTGCCATTTGGTACCGGCAGTCGCCGTCGGGGAAAGAGAAGGCAAAGCAATTAAGCAGTACGCATTAACGAATCGAAAAGCCACGGCGACTTTAGGGTTTTTAGGGACAAGATTGGGGGTAAAACCTTCGCCGGTGGTGGCGGCGTTTTCATCCAGAGGACCAAATTTCCTCACACTTGAGATCCTCAAGCCCGATCTGGTGGCTCCTGGCGTTAACATCCTCGCCGCTTGGACCGGAAAAACAGGGCCGTCGAGCTTGACGACGGATACAAGAAGGGTTAAATTCAACATTCTTTCAGGAACTTCAATGTCTTGCCCTCACGTCAGTGGCGTAGCGGCTTTGATCAAATCGAAGCATCCCGATTGGAGCCCGTCGGCGATCAAATCGGCACTGATGACCACCGCTTACGTCCACGACAACACCTATAAACCTCTCAAAGACTCCTCCGGCGCATCACCGTCGAGTCCGTACGACCATGGTGCCGGCCACATAAACCCTAGAAAAGCCCTCGATCCTGGTTTGGTTTACGAAATTCAGCCGCAAGATTACTTCGACTTCCTATGTACGCAGGATTTAACCCCTACACAGCTTAAAGTCTTCTCCAAATATTCGAACAGAACATGCCATCGTCTTCTCCCCAACCCAGGAGACCTGAATTATCCGGCCATCTCCGCCGTTTTCCCTGAGAAAACCTCCGTCACTTCCCTGACCCTTCACAGAACCGTCACCAACGTCGGCCCTGCAACCTCCAGTTATCATGCGGTGGTGACACCGTTCAACGGCGCCGCCGTGAAAGTTGAGCCGGAGAGTCTGAACTTCACAAGAAGGTATGAGAAGCTTTCTTACAGAATCACTTTTCTGACGAAGAAGAGACAGAGTATGCCGGAATTTGGAGGGCTGATCTGGAAGGATGGAACTCATAAAGTGAGAAGCCCCATTGTCATCACTTGGTTGTCGTTTGTTTGA 2322 50.39 MADTPLKWLCLLLFFHCFLLSTAQFFKTYVVQMDKSAMPDSFTDHLHWYSTVLSNVVVNLEREGSGGGGEERIIYSYHNVFHGIAARLSEQEAEKLEEEDGVLAIFPETKYELHTTRSPKFLGLEPADSNSAWSQQIADHDVIVGVLDTGIWPESDSFNDAGMSPVPAHWKGECETGRGFTKQNCNRKIVGARVFYHGYQAATGKFNEQLEYKSPRDQDGHGTHTAATVAGSPVAGASLLGYAYGTARGMAPGARIAAYKVCWVGGCFSSDILSAVDRAVADGVNVLSISLGGGVSSYYRDSLSVAAFGAMEMGVFVSCSAGNGGPDPVSLTNVSPWITTVGASTMDRDFPAIVKLGDGRTVTGVSLYRGRITIPENKQFPVVYMGSNSSSPDPSSLCLEGTLDPHFVAGKIVICDRGISPRVQKGVVVKNAGGVGMILSNTAANGEELVADCHLVPAVAVGEREGKAIKQYALTNRKATATLGFLGTRLGVKPSPVVAAFSSRGPNFLTLEILKPDLVAPGVNILAAWTGKTGPSSLTTDTRRVKFNILSGTSMSCPHVSGVAALIKSKHPDWSPSAIKSALMTTAYVHDNTYKPLKDSSGASPSSPYDHGAGHINPRKALDPGLVYEIQPQDYFDFLCTQDLTPTQLKVFSKYSNRTCHRLLPNPGDLNYPAISAVFPEKTSVTSLTLHRTVTNVGPATSSYHAVVTPFNGAAVKVEPESLNFTRRYEKLSYRITFLTKKRQSMPEFGGLIWKDGTHKVRSPIVITWLSFV 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20693666 20695987 - Lsi05G012890.1 Lsi05g01289 663781

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01289 773 PRINTS Subtilisin serine protease family (S8) signature 551 567 IPR015500 -
Lsi05g01289 773 PRINTS Subtilisin serine protease family (S8) signature 139 158 IPR015500 -
Lsi05g01289 773 PRINTS Subtilisin serine protease family (S8) signature 217 230 IPR015500 -
Lsi05g01289 773 ProSitePatterns Serine proteases, subtilase family, serine active site. 552 562 IPR023828 -
Lsi05g01289 773 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 114 IPR037045 -
Lsi05g01289 773 ProSiteProfiles Serine proteases, subtilase domain profile. 110 622 - -
Lsi05g01289 773 PANTHER XYLEM SERINE PROTEINASE 1 19 767 - -
Lsi05g01289 773 CDD PA_subtilisin_like 354 483 - -
Lsi05g01289 773 Pfam Peptidase inhibitor I9 28 114 IPR010259 -
Lsi05g01289 773 Gene3D Peptidase S8/S53 domain 141 635 IPR036852 GO:0004252|GO:0006508
Lsi05g01289 773 CDD Peptidases_S8_3 111 588 IPR034197 -
Lsi05g01289 773 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 19 767 IPR045051 -
Lsi05g01289 773 Gene3D - 347 491 - -
Lsi05g01289 773 Pfam Subtilase family 140 593 IPR000209 GO:0006508|GO:0008236
Lsi05g01289 773 Pfam PA domain 381 469 IPR003137 -
Lsi05g01289 773 SUPERFAMILY Subtilisin-like 113 626 IPR036852 GO:0004252|GO:0006508
Lsi05g01289 773 Pfam Fibronectin type-III domain 669 767 IPR041469 -
Lsi05g01289 773 Gene3D - 639 770 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01289 - - - csv:101214825 1440.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02862 Lsi-Chr2:34835744 Lsi05g01289 Lsi-Chr5:20693666 0 dispersed
Lsi02g02892 Lsi-Chr2:35145004 Lsi05g01289 Lsi-Chr5:20693666 0 dispersed
Lsi05g01289 Lsi-Chr5:20693666 Lsi06g00340 Lsi-Chr6:3784647 0 dispersed
Lsi05g01289 Lsi-Chr5:20693666 Lsi01g00922 Lsi-Chr1:7459533 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g533 . . . . Bpe03g00102 . . Bma14g02104 Cmo16g00173 Cmo18g01221 . . . . . . Cpe14g00140 Bhi01g01399 . . . Hepe07g0211 Mch10g0213 . . . . . . . . Cone1ag1115 Cone5ag0823 . . Lsi05g01289 . . Cme06g00938 Blo07g00459 Blo09g00124 . . . . . . . . . . . Car16g00144 . Cpe09g00128 . . . . . . . . Cla05g00825 Cam05g0909 Cec05g0912 Cco05g0916 Clacu05g0898 Cmu05g0855 Cre05g0942 . Csa03g01651 Chy06g00888 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g01155 . 22 794 Subtilisin-like Serine Gene Family AT1G01900 52.5 4.7e-224 774.6
Lsi04g01156 . 32 645 Subtilisin-like Serine Gene Family AT1G01900 59.7 1.2e-198 690.3
Lsi05g01054 . 28 769 Subtilisin-like Serine Gene Family AT1G04110 68.7 5.3e-313 1070.1
Lsi04g01764 . 77 807 Subtilisin-like Serine Gene Family AT1G20150 51.9 1.6e-216 749.6
Lsi04g01764 . 48 560 Subtilisin-like Serine Gene Family AT1G20160 60.7 7.8e-173 604.0
Lsi04g00924 . 9 215 Subtilisin-like Serine Gene Family AT1G20160 52.1 3.9e-55 213.0
Lsi07g01433 . 120 297 Subtilisin-like Serine Gene Family AT1G20160 51.4 6.7e-39 159.1
Lsi07g00238 . 72 737 Subtilisin-like Serine Gene Family AT1G32940 51.5 2.4e-185 646.0
Lsi07g00238 . 72 737 Subtilisin-like Serine Gene Family AT1G32950 51.9 2.8e-186 649.0
Lsi07g00238 . 39 737 Subtilisin-like Serine Gene Family AT1G32960 51.0 2.1e-195 679.5
Lsi02g01071 . 13 721 Subtilisin-like Serine Gene Family AT1G62340 54.1 1.3e-219 760.0
Lsi07g01431 . 26 764 Subtilisin-like Serine Gene Family AT2G04160 57.6 1.9e-249 859.0
Lsi07g01435 . 2 765 Subtilisin-like Serine Gene Family AT2G04160 54.0 1.1e-236 816.6
Lsi02g01177 . 3 650 Subtilisin-like Serine Gene Family AT2G04160 54.4 4.4e-198 688.3
Lsi11g01327 . 33 559 Subtilisin-like Serine Gene Family AT2G04160 57.5 4.6e-195 678.3
Lsi07g01432 . 2 353 Subtilisin-like Serine Gene Family AT2G04160 52.3 3.3e-100 363.2
Lsi06g00340 . 29 768 Subtilisin-like Serine Gene Family AT2G05920 73.7 0.0e+00 1101.7
Lsi01g00922 . 25 761 Subtilisin-like Serine Gene Family AT2G05920 55.7 6.0e-232 800.8
Lsi08g01515 . 1 700 Subtilisin-like Serine Gene Family AT2G05920 57.2 2.9e-218 755.4
Lsi05g01289 . 27 772 Subtilisin-like Serine Gene Family AT2G05920 52.1 3.0e-215 745.3
Lsi02g02892 . 30 761 Subtilisin-like Serine Gene Family AT2G05920 53.5 2.8e-213 738.8
Lsi10g00488 . 31 764 Subtilisin-like Serine Gene Family AT2G05920 51.0 1.3e-205 713.4
Lsi02g02862 . 33 786 Subtilisin-like Serine Gene Family AT2G05920 51.3 3.8e-202 701.8
Lsi04g01156 . 30 644 Subtilisin-like Serine Gene Family AT2G05920 51.0 6.9e-164 574.7
Lsi07g01433 . 120 297 Subtilisin-like Serine Gene Family AT2G05920 53.0 2.3e-42 171.0
Lsi11g00788 CCT 34 835 Subtilisin-like Serine Gene Family AT2G19170 82.1 0.0e+00 1342.4
Lsi02g02892 . 8 768 Subtilisin-like Serine Gene Family AT3G14067 64.8 8.7e-287 983.0
Lsi01g00922 . 9 761 Subtilisin-like Serine Gene Family AT3G14067 53.5 1.1e-223 773.5
Lsi06g00340 . 28 766 Subtilisin-like Serine Gene Family AT3G14067 54.3 2.4e-220 762.3
Lsi08g01515 . 1 700 Subtilisin-like Serine Gene Family AT3G14067 52.9 3.0e-202 702.2
Lsi02g02862 . 36 794 Subtilisin-like Serine Gene Family AT3G14240 77.0 0.0e+00 1205.7
Lsi10g00488 . 32 772 Subtilisin-like Serine Gene Family AT3G14240 58.5 1.8e-244 842.4
Lsi01g00922 . 27 757 Subtilisin-like Serine Gene Family AT3G14240 52.3 2.8e-216 748.8
Lsi05g01289 . 28 768 Subtilisin-like Serine Gene Family AT3G14240 50.3 1.1e-212 736.9
Lsi06g00340 . 32 762 Subtilisin-like Serine Gene Family AT3G14240 51.3 1.3e-210 729.9
Lsi02g02892 . 29 759 Subtilisin-like Serine Gene Family AT3G14240 50.9 6.6e-210 727.6
Lsi08g01515 . 1 699 Subtilisin-like Serine Gene Family AT3G14240 51.9 2.2e-197 686.0
Lsi04g01156 . 28 645 Subtilisin-like Serine Gene Family AT3G14240 53.1 1.8e-170 596.7
Lsi10g01083 . 13 735 Subtilisin-like Serine Gene Family AT3G46840 51.4 1.8e-196 682.9
Lsi10g01083 . 13 731 Subtilisin-like Serine Gene Family AT3G46850 51.4 2.5e-198 689.1
Lsi04g01157 . 9 515 Subtilisin-like Serine Gene Family AT4G00230 52.1 1.8e-162 569.7
Lsi04g01158 . 16 505 Subtilisin-like Serine Gene Family AT4G00230 55.1 7.2e-156 547.7
Lsi04g01159 . 63 451 Subtilisin-like Serine Gene Family AT4G00230 65.0 3.1e-143 505.8
Lsi04g00925 . 1 468 Subtilisin-like Serine Gene Family AT4G00230 51.1 6.1e-131 464.9
Lsi07g00238 . 72 737 Subtilisin-like Serine Gene Family AT4G10510 51.2 8.6e-188 654.1
Lsi07g00238 . 39 732 Subtilisin-like Serine Gene Family AT4G10520 50.3 4.6e-192 668.3
Lsi07g00238 . 72 737 Subtilisin-like Serine Gene Family AT4G10550 51.2 3.2e-190 662.1
Lsi02g00661 . 21 346 Subtilisin-like Serine Gene Family AT4G21320 67.0 2.5e-122 435.3
Lsi03g00103 . 46 338 Subtilisin-like Serine Gene Family AT4G26330 54.9 2.7e-96 350.1
Lsi11g00788 CCT 29 835 Subtilisin-like Serine Gene Family AT4G30020 81.6 0.0e+00 1335.1
Lsi10g00488 . 25 772 Subtilisin-like Serine Gene Family AT4G34980 75.2 0.0e+00 1155.2
Lsi02g02862 . 35 794 Subtilisin-like Serine Gene Family AT4G34980 53.8 3.3e-230 795.0
Lsi01g00922 . 1 757 Subtilisin-like Serine Gene Family AT4G34980 51.1 2.4e-212 735.7
Lsi05g01289 . 9 771 Subtilisin-like Serine Gene Family AT4G34980 51.0 9.1e-212 733.8
Lsi06g00340 . 28 762 Subtilisin-like Serine Gene Family AT4G34980 50.9 1.0e-207 720.3
Lsi08g01515 . 1 699 Subtilisin-like Serine Gene Family AT4G34980 50.5 1.2e-190 663.7
Lsi07g01436 . 76 287 Subtilisin-like Serine Gene Family AT4G34980 51.6 5.0e-53 206.5
Lsi07g01433 . 120 293 Subtilisin-like Serine Gene Family AT4G34980 51.7 1.4e-39 161.8
Lsi01g01238 . 1 416 Subtilisin-like Serine Gene Family AT5G03620 51.4 1.8e-135 479.9
Lsi04g00925 . 4 467 Subtilisin-like Serine Gene Family AT5G03620 53.6 1.5e-129 460.3
Lsi04g01159 . 63 449 Subtilisin-like Serine Gene Family AT5G03620 53.7 1.9e-105 380.2
Lsi06g00869 . 291 1037 Subtilisin-like Serine Gene Family AT5G19660 79.4 0.0e+00 1239.2
Lsi01g00203 . 173 424 Subtilisin-like Serine Gene Family AT5G45640 53.5 5.8e-70 262.7
Lsi01g00203 . 175 424 Subtilisin-like Serine Gene Family AT5G45650 55.7 2.7e-73 273.9
Lsi07g01436 . 76 287 Subtilisin-like Serine Gene Family AT5G45650 50.9 5.2e-53 206.5
Lsi05g01289 . 27 770 Subtilisin-like Serine Gene Family AT5G51750 74.0 0.0e+00 1161.0
Lsi01g00922 . 13 761 Subtilisin-like Serine Gene Family AT5G51750 52.3 4.4e-230 794.7
Lsi06g00340 . 27 766 Subtilisin-like Serine Gene Family AT5G51750 51.1 7.8e-219 757.3
Lsi08g01515 . 1 700 Subtilisin-like Serine Gene Family AT5G51750 54.2 1.3e-213 740.0
Lsi07g01436 . 76 287 Subtilisin-like Serine Gene Family AT5G51750 51.6 2.9e-56 217.2
Lsi07g01433 . 120 295 Subtilisin-like Serine Gene Family AT5G51750 50.6 1.0e-45 182.2
Lsi10g01083 . 28 733 Subtilisin-like Serine Gene Family AT5G58830 51.0 2.4e-182 636.0
Lsi10g01083 . 28 551 Subtilisin-like Serine Gene Family AT5G58840 53.7 1.6e-146 516.5
Lsi10g01083 . 9 733 Subtilisin-like Serine Gene Family AT5G59090 50.7 2.7e-189 659.1
Lsi10g01083 . 10 731 Subtilisin-like Serine Gene Family AT5G59100 51.0 9.4e-198 687.2
Lsi10g01083 . 22 731 Subtilisin-like Serine Gene Family AT5G59120 51.4 2.0e-192 669.5
Lsi10g01083 . 36 730 Subtilisin-like Serine Gene Family AT5G59190 51.9 2.5e-192 669.1
Lsi04g00925 . 1 644 Subtilisin-like Serine Gene Family AT5G59190 50.6 1.2e-173 607.1
Lsi07g01435 . 1 765 Subtilisin-like Serine Gene Family AT5G59810 55.5 2.7e-235 812.0
Lsi07g01431 . 1 764 Subtilisin-like Serine Gene Family AT5G59810 54.9 2.3e-234 808.9
Lsi02g01177 . 1 653 Subtilisin-like Serine Gene Family AT5G59810 59.3 1.4e-220 763.1
Lsi07g01437 . 300 924 Subtilisin-like Serine Gene Family AT5G59810 50.2 8.7e-194 674.1
Lsi11g01327 . 33 559 Subtilisin-like Serine Gene Family AT5G59810 53.1 2.8e-176 615.9
Lsi02g01178 . 23 610 Subtilisin-like Serine Gene Family AT5G59810 54.9 5.0e-173 605.1
Lsi07g01432 . 1 353 Subtilisin-like Serine Gene Family AT5G59810 52.2 2.2e-104 377.1
Lsi07g01436 . 2 287 Subtilisin-like Serine Gene Family AT5G59810 52.0 1.2e-86 318.2
Lsi07g01433 . 3 291 Subtilisin-like Serine Gene Family AT5G59810 51.2 2.4e-79 293.9
Lsi01g00922 . 8 762 Subtilisin-like Serine Gene Family AT5G67360 72.1 0.0e+00 1102.4
Lsi08g01515 . 1 701 Subtilisin-like Serine Gene Family AT5G67360 66.7 2.6e-275 944.9
Lsi06g00340 . 32 767 Subtilisin-like Serine Gene Family AT5G67360 56.6 4.1e-233 804.7
Lsi05g01289 . 11 769 Subtilisin-like Serine Gene Family AT5G67360 53.8 1.2e-227 786.6
Lsi02g02892 . 8 760 Subtilisin-like Serine Gene Family AT5G67360 55.8 4.4e-227 784.6
Lsi10g00488 . 7 767 Subtilisin-like Serine Gene Family AT5G67360 51.2 1.3e-210 729.9
Lsi02g02862 . 36 789 Subtilisin-like Serine Gene Family AT5G67360 51.8 2.4e-209 725.7
Lsi04g01156 . 32 644 Subtilisin-like Serine Gene Family AT5G67360 50.7 2.4e-164 576.2
Lsi07g01436 . 76 285 Subtilisin-like Serine Gene Family AT5G67360 51.2 3.7e-56 216.9
Lsi07g01433 . 120 296 Subtilisin-like Serine Gene Family AT5G67360 54.7 2.8e-48 190.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007662 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01289 Lsi_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 3.101813 2.463495 0.0 11.562938 0.0