Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01289 ATGGCTGATACTCCTCTCAAATGGCTCTGTTTGCTGCTCTTTTTTCACTGTTTCCTTCTTTCAACCGCTCAGTTTTTTAAAACTTATGTTGTTCAAATGGACAAGTCTGCAATGCCGGACTCATTTACGGATCATCTTCATTGGTATTCCACAGTACTAAGCAATGTGGTTGTTAATCTTGAGAGAGAAGGTAGTGGGGGAGGAGGTGAAGAGAGGATTATTTACAGTTACCATAATGTTTTCCATGGAATTGCAGCTCGATTGAGTGAACAAGAGGCTGAGAAGCTCGAGGAAGAAGATGGGGTATTGGCCATTTTTCCTGAGACGAAGTACGAGCTTCATACTACCAGAAGCCCCAAATTTCTTGGGCTTGAACCAGCTGACAGCAACAGCGCCTGGTCTCAGCAAATTGCAGACCATGATGTGATTGTTGGAGTTTTGGACACTGGGATTTGGCCGGAGAGTGACAGCTTCAATGACGCCGGAATGTCGCCCGTGCCGGCGCATTGGAAAGGGGAATGCGAAACAGGGCGAGGGTTCACGAAACAGAATTGTAACAGAAAGATCGTTGGTGCCAGAGTGTTCTACCATGGGTATCAAGCTGCAACTGGGAAATTTAACGAACAGTTGGAGTACAAATCGCCGAGGGATCAAGATGGGCATGGAACTCACACCGCAGCCACCGTCGCTGGCTCTCCGGTGGCCGGCGCGAGCCTCCTTGGTTATGCATATGGAACAGCCAGAGGAATGGCGCCCGGAGCTAGAATTGCGGCTTACAAAGTTTGTTGGGTTGGTGGCTGCTTTAGCTCCGACATTTTGTCGGCAGTTGACAGAGCTGTGGCCGACGGAGTAAATGTTCTGTCCATCTCTTTGGGAGGTGGGGTCTCTTCTTACTATCGCGATAGTCTCTCCGTTGCAGCATTTGGAGCAATGGAGATGGGCGTCTTTGTCTCCTGCTCGGCCGGAAATGGAGGCCCGGACCCTGTCAGTCTCACAAATGTATCACCATGGATAACCACTGTCGGCGCCAGCACAATGGACAGAGATTTCCCGGCCATTGTCAAGCTCGGCGATGGCAGAACAGTCACCGGCGTTTCACTTTACAGAGGAAGAATCACAATTCCAGAAAACAAACAATTCCCAGTTGTATACATGGGGAGTAACTCAAGCAGCCCCGATCCGAGCTCGCTGTGTTTGGAAGGAACTTTAGATCCCCATTTTGTGGCCGGAAAAATTGTGATATGCGATCGCGGAATTAGCCCTCGGGTTCAGAAGGGTGTGGTGGTGAAAAATGCAGGTGGGGTTGGGATGATTCTGTCGAACACGGCGGCGAATGGGGAAGAACTTGTTGCTGATTGCCATTTGGTACCGGCAGTCGCCGTCGGGGAAAGAGAAGGCAAAGCAATTAAGCAGTACGCATTAACGAATCGAAAAGCCACGGCGACTTTAGGGTTTTTAGGGACAAGATTGGGGGTAAAACCTTCGCCGGTGGTGGCGGCGTTTTCATCCAGAGGACCAAATTTCCTCACACTTGAGATCCTCAAGCCCGATCTGGTGGCTCCTGGCGTTAACATCCTCGCCGCTTGGACCGGAAAAACAGGGCCGTCGAGCTTGACGACGGATACAAGAAGGGTTAAATTCAACATTCTTTCAGGAACTTCAATGTCTTGCCCTCACGTCAGTGGCGTAGCGGCTTTGATCAAATCGAAGCATCCCGATTGGAGCCCGTCGGCGATCAAATCGGCACTGATGACCACCGCTTACGTCCACGACAACACCTATAAACCTCTCAAAGACTCCTCCGGCGCATCACCGTCGAGTCCGTACGACCATGGTGCCGGCCACATAAACCCTAGAAAAGCCCTCGATCCTGGTTTGGTTTACGAAATTCAGCCGCAAGATTACTTCGACTTCCTATGTACGCAGGATTTAACCCCTACACAGCTTAAAGTCTTCTCCAAATATTCGAACAGAACATGCCATCGTCTTCTCCCCAACCCAGGAGACCTGAATTATCCGGCCATCTCCGCCGTTTTCCCTGAGAAAACCTCCGTCACTTCCCTGACCCTTCACAGAACCGTCACCAACGTCGGCCCTGCAACCTCCAGTTATCATGCGGTGGTGACACCGTTCAACGGCGCCGCCGTGAAAGTTGAGCCGGAGAGTCTGAACTTCACAAGAAGGTATGAGAAGCTTTCTTACAGAATCACTTTTCTGACGAAGAAGAGACAGAGTATGCCGGAATTTGGAGGGCTGATCTGGAAGGATGGAACTCATAAAGTGAGAAGCCCCATTGTCATCACTTGGTTGTCGTTTGTTTGA 2322 50.39 MADTPLKWLCLLLFFHCFLLSTAQFFKTYVVQMDKSAMPDSFTDHLHWYSTVLSNVVVNLEREGSGGGGEERIIYSYHNVFHGIAARLSEQEAEKLEEEDGVLAIFPETKYELHTTRSPKFLGLEPADSNSAWSQQIADHDVIVGVLDTGIWPESDSFNDAGMSPVPAHWKGECETGRGFTKQNCNRKIVGARVFYHGYQAATGKFNEQLEYKSPRDQDGHGTHTAATVAGSPVAGASLLGYAYGTARGMAPGARIAAYKVCWVGGCFSSDILSAVDRAVADGVNVLSISLGGGVSSYYRDSLSVAAFGAMEMGVFVSCSAGNGGPDPVSLTNVSPWITTVGASTMDRDFPAIVKLGDGRTVTGVSLYRGRITIPENKQFPVVYMGSNSSSPDPSSLCLEGTLDPHFVAGKIVICDRGISPRVQKGVVVKNAGGVGMILSNTAANGEELVADCHLVPAVAVGEREGKAIKQYALTNRKATATLGFLGTRLGVKPSPVVAAFSSRGPNFLTLEILKPDLVAPGVNILAAWTGKTGPSSLTTDTRRVKFNILSGTSMSCPHVSGVAALIKSKHPDWSPSAIKSALMTTAYVHDNTYKPLKDSSGASPSSPYDHGAGHINPRKALDPGLVYEIQPQDYFDFLCTQDLTPTQLKVFSKYSNRTCHRLLPNPGDLNYPAISAVFPEKTSVTSLTLHRTVTNVGPATSSYHAVVTPFNGAAVKVEPESLNFTRRYEKLSYRITFLTKKRQSMPEFGGLIWKDGTHKVRSPIVITWLSFV 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20693666 20695987 - Lsi05G012890.1 Lsi05g01289 663781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01289 773 PRINTS Subtilisin serine protease family (S8) signature 551 567 IPR015500 -
Lsi05g01289 773 PRINTS Subtilisin serine protease family (S8) signature 139 158 IPR015500 -
Lsi05g01289 773 PRINTS Subtilisin serine protease family (S8) signature 217 230 IPR015500 -
Lsi05g01289 773 ProSitePatterns Serine proteases, subtilase family, serine active site. 552 562 IPR023828 -
Lsi05g01289 773 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 114 IPR037045 -
Lsi05g01289 773 ProSiteProfiles Serine proteases, subtilase domain profile. 110 622 - -
Lsi05g01289 773 PANTHER XYLEM SERINE PROTEINASE 1 19 767 - -
Lsi05g01289 773 CDD PA_subtilisin_like 354 483 - -
Lsi05g01289 773 Pfam Peptidase inhibitor I9 28 114 IPR010259 -
Lsi05g01289 773 Gene3D Peptidase S8/S53 domain 141 635 IPR036852 GO:0004252|GO:0006508
Lsi05g01289 773 CDD Peptidases_S8_3 111 588 IPR034197 -
Lsi05g01289 773 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 19 767 IPR045051 -
Lsi05g01289 773 Gene3D - 347 491 - -
Lsi05g01289 773 Pfam Subtilase family 140 593 IPR000209 GO:0006508|GO:0008236
Lsi05g01289 773 Pfam PA domain 381 469 IPR003137 -
Lsi05g01289 773 SUPERFAMILY Subtilisin-like 113 626 IPR036852 GO:0004252|GO:0006508
Lsi05g01289 773 Pfam Fibronectin type-III domain 669 767 IPR041469 -
Lsi05g01289 773 Gene3D - 639 770 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02862 Lsi-Chr2:34835744 Lsi05g01289 Lsi-Chr5:20693666 0 dispersed
Lsi02g02892 Lsi-Chr2:35145004 Lsi05g01289 Lsi-Chr5:20693666 0 dispersed
Lsi05g01289 Lsi-Chr5:20693666 Lsi06g00340 Lsi-Chr6:3784647 0 dispersed
Lsi05g01289 Lsi-Chr5:20693666 Lsi01g00922 Lsi-Chr1:7459533 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01289 - - csv:101214825 1440.25