Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01300 ATGGGTTGTCGGTTCCTTATGGCGAGAAGAGGAGGAGCAATTGGATCGTGGCTCTGCATCGTTGTGGTTTTAATTTCTGCGCAAATTCATGTCACAGCCAGATCGGATAAGGAAATTAGGGAGAGATTTTATGGAAACTTGATAAACTCGACGGCTCCGACTTCCGGTGACGGTAGCATTGCCCAAATGTTCGATAAGGTTCTTGAGAAGGAGTTCTCTGACAATGATCTGCCTGAAGGTTCTGGTGGAAGCAGCTTTAATAGCAGTGTTGCTGATCAGGAGGCAGAACTGGAGACGGTAGCTAAAATCACACATGAGAAGGGCAAGAAAAATGATAGTCAAAAGGCAAATGGGACAAGAGCATTCCAATTTCAGGACGTTTTTTCTCTTGAAAATGAAGAATCTGATGATGTTACAACGTTGATTGATAAAAAAGACAATGTATTTGTGATGTCAAACAAGAAGTCAAAGTATCCAGTACTTCAAGTAGATTTGAGATTGATCTCAGACTTGGTTGTGGTTATTGTTTCTGCCGCAATTGGAGGAATTATCTTTTCTTGTTTAGGGCAACCTGTTATTGTGGGCTATCTTCTTGCGGGGTCAATCATTGGACCGGGAGGTCTAAAATTCATCAGTGAAATGGTGCAGGTTGAGACAGTGGCACAATTTGGTGTTGTATTTCTTCTTTTCGCTTTAGGACTGGAGTTTTCTTTGACAAAGTTAAAAGTTGTGGGAGCTGTGGCTGTTTTTGGAGGTTTTCTACAGATCATCATATTTATGTTCTTGTGTGGTATCATTGCCATGTTAAGTGGAGCTAAATTGTCAGAGGGTGTATTTGTTGGTTCATTTCTATCAATGTCATCTACAGCAGTGGTGGTGAAGTTCTTGGTGGAACGGAATAGCAGTAATACACTTCATGGTCAAGTTACTATTGGAACACTCATCTTACAGGATTGTGCCGTTGGTTTGTTGTTTGCCTTGCTCCCAGTTTTGGGTGGTCACAATGGTCTTATTTTAGGAATGATATCTATGGGAAAGTTGCTACTGGTGTTGTCAGTATATCTCACAGCCGCATCTATTTTGTCATGGTCATTTGTTCCCCGCTTTCTTAAGTTGATGATGCAGCTGTCATCTCAAACAAATGAGTTGTATCAGCTTGCTGCTGTGGCATTTTGCTTGCTGTCTGCTTGGTGCAGTGATAAGCTGGGCCTCAGTCTTGAGTTGGGTTCCTTTGTAGCTGGAGTTATGATATCTACCACTGACTTCGGTCAACATACGTTAGATCAGGTGGAACCGATCCGCAATTTTTTTGCAGCTTTGTTCCTTTCAAGTATTGGAATGCTCATTCATGTACATTTTCTGTGGAGCCATTTGGACATTTTGCTAGCATCTGTAATGCTGGTTGTGTTTGTCAAGACAGCAGTTGCTACCATTGTTGCAAAGGCATTTGGATACAGTATTAGGACTTCTTTTCAGGTTGGGATCATGCTTGCTCAAATTGGAGAATTTGCTTTTGTTCTCCTAAGCCGTGCTTCAAATCTTCATCTCATTGGGACAAAATATGACGATAGGCCTGCACATATCACGTTTTTAGTTCTGGGTGTGAAGTCTCAAGCATTAACAACACTCTGTTACGACCCCTCTTCTGTTCAAATTGATACCTGCCGTGTTAAATTTAGGGGTTCTCATGCATTGGTTCCCCTCTGA 1707 41.77 MGCRFLMARRGGAIGSWLCIVVVLISAQIHVTARSDKEIRERFYGNLINSTAPTSGDGSIAQMFDKVLEKEFSDNDLPEGSGGSSFNSSVADQEAELETVAKITHEKGKKNDSQKANGTRAFQFQDVFSLENEESDDVTTLIDKKDNVFVMSNKKSKYPVLQVDLRLISDLVVVIVSAAIGGIIFSCLGQPVIVGYLLAGSIIGPGGLKFISEMVQVETVAQFGVVFLLFALGLEFSLTKLKVVGAVAVFGGFLQIIIFMFLCGIIAMLSGAKLSEGVFVGSFLSMSSTAVVVKFLVERNSSNTLHGQVTIGTLILQDCAVGLLFALLPVLGGHNGLILGMISMGKLLLVLSVYLTAASILSWSFVPRFLKLMMQLSSQTNELYQLAAVAFCLLSAWCSDKLGLSLELGSFVAGVMISTTDFGQHTLDQVEPIRNFFAALFLSSIGMLIHVHFLWSHLDILLASVMLVVFVKTAVATIVAKAFGYSIRTSFQVGIMLAQIGEFAFVLLSRASNLHLIGTKYDDRPAHITFLVLGVKSQALTTLCYDPSSVQIDTCRVKFRGSHALVPL 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20759125 20767830 + Lsi05G013000.1 Lsi05g01300 663792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01300 568 Gene3D - 165 545 IPR038770 -
Lsi05g01300 568 PANTHER K(+) EFFLUX ANTIPORTER 5 30 521 - -
Lsi05g01300 568 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 30 521 IPR045158 GO:0015386|GO:0071805|GO:1902600
Lsi05g01300 568 Pfam Sodium/hydrogen exchanger family 172 520 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01300 Lsi-Chr5:20759125 Lsi08g01579 Lsi-Chr8:23818752 0 dispersed
Lsi05g01300 Lsi-Chr5:20759125 Lsi06g00267 Lsi-Chr6:3011521 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01300 - - csv:101207607 932.939