Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01307 ATGGAGGAGAACGAAACCGGAGGTTCTAGGTTTACAGTTACGAATGATGAAGCCCTAGACAGCTTCCAGTTAGCTCCAAGAACAGAAGCCCTAAAATCAACCGGTGAGTCTAAAGTGACGGAGCTCGCCGCAGCTGCTCCACCACCGGGGTTTGCAGCGGCGGCTGATGCACCACCGGCGAGTGTAGCGGTTTCTAGTACTGAAACAAAGAAGAAGAGAGGGAGGCCGAGAAAGTACGGACCGGATGGGAAACGGTCATTGACATTGGCGTTGTCTCCGATGCCGATATCGTCGTCAATTCCACTGACCGGAGAGTTCCCGAATTGGAAACGAGACAACGAGATTTCTCAAGCGATAGTCAAGAAGCCGCAGAGATTCGAGTTTGAGAATCCCGGTCAGAGACTTGCATACTCTGTTGGTGCAAATTTTACTCCCCATGTGATCACTGTCAATGCTGGAGAGGTTTCAGTCTCTCTTTCTGTTAAGGGATTAGTTGTGAGAACTTCAGAGTTTGGACACCCTTGTAATTCATCTGCGCATGCTTGTGGGGTGGACATTACAATGAAGGTTATGTCTTTCTCTCAACAAGAATCCCGAGCTATTTGCATTCTTTCTGCAAATGGTACAATTTCAAATGTTACACTTCGACAGGCAACTTCTTCCGGAGGTACCTTAACGTATGAGGGTCGTTTTGAGATACTTGCATTGACCGGATCATATATGCCCACACAGAATGGAGCTACAAAGAGCAGATGTGGTGGGATGAGCGTCTCGCTAGCGGGTCAAGATGGGCGAGTCGTTGGCGGTGGACTTGCTGGTTTGTTGGTAGCTGCTGGTCCTGTGCAAGTTGTGGTCGGCAGTTTCCTTCCAGGTCACCAGCAAGAACAGAAGCCAAAAAAGCCTAGAAACGAGTCCACAACCATTTTCTTTCCTCCCGTCAACACCATCACTGGTGAAGAAATGAAGGCAGTATATGCTGGTGTTAACAAGCCTATTCTCTCAACGCCATCCTATCAAGAACAACATAATCCACCGTCCCCTAACCCGGTGACAGGCTTCAAAATCTCCTCCACTGACAACTTACCTCTATCTGATCAAGAACCAAAAACACAAAGTCAATCAAACTGTGAGGTTTCTTGTTGA 1143 47.94 MEENETGGSRFTVTNDEALDSFQLAPRTEALKSTGESKVTELAAAAPPPGFAAAADAPPASVAVSSTETKKKRGRPRKYGPDGKRSLTLALSPMPISSSIPLTGEFPNWKRDNEISQAIVKKPQRFEFENPGQRLAYSVGANFTPHVITVNAGEVSVSLSVKGLVVRTSEFGHPCNSSAHACGVDITMKVMSFSQQESRAICILSANGTISNVTLRQATSSGGTLTYEGRFEILALTGSYMPTQNGATKSRCGGMSVSLAGQDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQEQKPKKPRNESTTIFFPPVNTITGEEMKAVYAGVNKPILSTPSYQEQHNPPSPNPVTGFKISSTDNLPLSDQEPKTQSQSNCEVSC 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20815809 20820611 + Lsi05G013070.1 Lsi05g01307 663799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01307 380 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 183 360 - -
Lsi05g01307 380 SUPERFAMILY AF0104/ALDC/Ptd012-like 183 294 - -
Lsi05g01307 380 MobiDBLite consensus disorder prediction 1 20 - -
Lsi05g01307 380 Gene3D - 180 304 - -
Lsi05g01307 380 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 8 154 - -
Lsi05g01307 380 MobiDBLite consensus disorder prediction 49 85 - -
Lsi05g01307 380 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 154 IPR039605 GO:0003680
Lsi05g01307 380 ProSiteProfiles PPC domain profile profile. 169 313 IPR005175 -
Lsi05g01307 380 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 183 360 IPR039605 GO:0003680
Lsi05g01307 380 MobiDBLite consensus disorder prediction 335 380 - -
Lsi05g01307 380 CDD DUF296 183 288 IPR005175 -
Lsi05g01307 380 Pfam Plants and Prokaryotes Conserved (PCC) domain 183 288 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01307 Lsi09g00539 CCT
Lsi05g01307 Lsi09g00539 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01307 Lsi-Chr5:20815809 Lsi05g01962 Lsi-Chr5:26747752 4.49E-73 dispersed
Lsi09g00539 Lsi-Chr9:5661639 Lsi05g01307 Lsi-Chr5:20815809 1.24E-109 transposed
Lsi11g00412 Lsi-Chr11:4296550 Lsi05g01307 Lsi-Chr5:20815809 1.99E-37 transposed
Lsi05g01307 Lsi-Chr5:20815809 Lsi09g00368 Lsi-Chr9:3836578 6.23E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01307 - - csv:101217222 572.392