Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01321 ATGACTCTTTCAATGGAGAAATTAAGTCTTGGCCGGGTGTTCCTTTTTCTTCACTTCTTTCTACTATCTTCAACAACCTTTTCCAAGCCTACCACTAATGGCCTTATTGATTGGTGGTGCAAAAAAACCACATACCCTGAAACTTGCAAATACTTTTTCAACCATGGCAGCAAGGCTACTCCCAAAGATATGGCTGAGTTCAAGAAAATGGTGATCCAATTTGCCATGGAAACCGCTCTCAATGCTGAGAGCTACACTAAAGATGTCGGTTCGATGTGTCGAAATGGGAAAGAAAAGGCAGCTTGGACTGATTGCTTGAAGCTATACCAAAACACCATCTTTCAACTCAACCAAACTCTATATTCCTCTACTACTTGTACTGATTTCGATATCCAAACCTGGCTCAGTACTGCCCTAACCAACCTCGAAACGTGTCGTACCGGGTTTGCCGAGCTTAATGTTTCAGACTATATATTACCGATGATCATGTCGAACAATGTCACGAAACTGATAAGCAATAGTTTGGCTATTAATAACAATGCTTCAAGTGGGGTAATGGGGAAGGAAACATATAAAAAGGGATTTCCAAGTTGGGTTTCAAGTGGTGATAGGAGGTTATTGCAATCGTCGTCGATAAAGGTGGATGTTGTGGTGGCTCGAGACGGATCGGGTAACTATAGGACGGTGGGAGAAGCTGTAGAGGAAGCTGGGAAAAGGAAGGGAAATGGGAGATTTGTTATAAAAGTAAAGAGAGGGGTTTATGAAGAAAATGTGGAGATAGGAAGTAAGATGAAGAATATAATGCTGATTGGAGATGGAATGAGATTGACTTTCATTACTGGTAATAGAAGTGTAGGAGGAGGCTCCACCACTTTCAATTCTGCTACTCTTAACCAAGAAATAATTAGTCTTTCAATGGAGAAATTAAGTCTTGGCCGGGTGTTCCTTTTTCTTCACTTCTTTCTACTATCTTCAACAACCTTTTCCAAGCCTACCACTAATGGCCTTATTGATTGGTGGTGCAAAAAAACCACATACCCTGAAACTTGCAAATACTTTTTCAACCATGGCAGCAAGGCTACTCCCAAAGATATGGCTGAGTTCAAGAAAATGGTGATCCAATTTGCCATGGAAACCGCTCTCAATGCTGAGAGCTACACTAAAGATGTCGGTTCGATGTGTCGAAATGGGAAAGAAAAGGCAGCTTGGACTGATTGCTTGAAGCTATACCAAAACACCATCTTTCAACTCAACCAAACTCTATATTCCTCTACTACTTGTACTGATTTCGATATCCAAACCTGGCTCAGTACTGCCCTAACCAACCTCGAAACGTGTCGTACCGGGTTTGCCGAGCTTAATGTTTCAGACTATATATTACCGATGATCATGTCGAACAATGTCACGAAACTGATAAGCAATAGTTTGGCTATTAATAACAATGCTTCAAGTGGGGTAATGGGGAAGGAAACATATAAAAAGGGATTTCCAAGTTGGGTTTCAAGTGGTGATAGGAGGTTATTGCAATCGTCGTCGATAAAGGTGGATGTTGTGGTGGCTCGAGACGGATCGGGTAACTATAGGACGGTGGGAGAAGCTGTAGAGGAAGCTGGGAAAAGGAAGGGAAATGGGAGATTTGTTATAAAAGTAAAGAGAGGGGTTTATGAAGAAAATGTGGAGATAGGAAGTAAGATGAAGAATATAATGCTGATTGGAGATGGAATGAGATTGACTTTCATTACTGGTAATAGAAGTGTAGGAGGAGGCTCCACCACTTTCAATTCTGCTACTGTTGCGGTGACCGGTGAAGGATTTATAGCTCAGGGCATCACATTCCAAAACACCGCCGGTCCCGAAAACCATCAAGCAGTTGCTCTCCGATCAGGCTCAGATCTCTCTGTTTTCTACCGCTGTGCCTTCGAAGGTTATCAAGACACACTTTATGTCCATTCACAAAGACAATTCTACAAGGAATGTTATATTTACGGTACAGTAGATTTCATATTTGGCAATGCTGCAGTTGTTTTACAAAACTGCATGCTTTACGCAAGGAAGCCAATGAATGGTCAGAAAAATGCAGTCACTGCTCAAGGACGAACGGACCCAAATCAAAACACTGGCATTTCAATTCATAATTCACGGGTAATGGCCACAGATGAGTTAAAAATAGTGGAGAACACAGTGAAAACTTACTTAGGAAGGCCATGGAAGGAGTATTCTCGAACAGTTTATATGAAAACTTACCTTGATAGTTTGGTTGATCCAATGGGTTGGTTGGAATGGGATGGTGAATTTGCATTGAATACTTTATATTATGGAGAATATAAGAATATTGGTCCTGCTTCATCAACAAGCCAGCGAGTTAATTGGAAAGGTTACCATGTTATTAGTAATGCAACAGAGGCATCGGAGTTTACTGTTCAAAATTTCATTGCAGGGGAGTCTTGGTTGCCAGATACAGAGGTCCCATTCACTCCTGGACTCTAG 2487 41.42 MTLSMEKLSLGRVFLFLHFFLLSSTTFSKPTTNGLIDWWCKKTTYPETCKYFFNHGSKATPKDMAEFKKMVIQFAMETALNAESYTKDVGSMCRNGKEKAAWTDCLKLYQNTIFQLNQTLYSSTTCTDFDIQTWLSTALTNLETCRTGFAELNVSDYILPMIMSNNVTKLISNSLAINNNASSGVMGKETYKKGFPSWVSSGDRRLLQSSSIKVDVVVARDGSGNYRTVGEAVEEAGKRKGNGRFVIKVKRGVYEENVEIGSKMKNIMLIGDGMRLTFITGNRSVGGGSTTFNSATLNQEIISLSMEKLSLGRVFLFLHFFLLSSTTFSKPTTNGLIDWWCKKTTYPETCKYFFNHGSKATPKDMAEFKKMVIQFAMETALNAESYTKDVGSMCRNGKEKAAWTDCLKLYQNTIFQLNQTLYSSTTCTDFDIQTWLSTALTNLETCRTGFAELNVSDYILPMIMSNNVTKLISNSLAINNNASSGVMGKETYKKGFPSWVSSGDRRLLQSSSIKVDVVVARDGSGNYRTVGEAVEEAGKRKGNGRFVIKVKRGVYEENVEIGSKMKNIMLIGDGMRLTFITGNRSVGGGSTTFNSATVAVTGEGFIAQGITFQNTAGPENHQAVALRSGSDLSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMLYARKPMNGQKNAVTAQGRTDPNQNTGISIHNSRVMATDELKIVENTVKTYLGRPWKEYSRTVYMKTYLDSLVDPMGWLEWDGEFALNTLYYGEYKNIGPASSTSQRVNWKGYHVISNATEASEFTVQNFIAGESWLPDTEVPFTPGL 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20974152 20980081 + Lsi05G013210.1 Lsi05g01321 663813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01321 828 Gene3D - 510 828 IPR012334 -
Lsi05g01321 828 Gene3D - 209 315 IPR012334 -
Lsi05g01321 828 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 335 481 IPR035513 -
Lsi05g01321 828 Gene3D Invertase/pectin methylesterase inhibitor family protein 332 482 IPR035513 -
Lsi05g01321 828 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 181 IPR035513 -
Lsi05g01321 828 ProSitePatterns Pectinesterase signature 2. 661 670 IPR033131 -
Lsi05g01321 828 PANTHER PECTINESTERASE 12 297 - -
Lsi05g01321 828 TIGRFAM PME_inhib: pectinesterase inhibitor domain 13 180 IPR006501 GO:0004857
Lsi05g01321 828 TIGRFAM PME_inhib: pectinesterase inhibitor domain 314 481 IPR006501 GO:0004857
Lsi05g01321 828 CDD PMEI-like_3 38 183 - -
Lsi05g01321 828 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 180 IPR035513 -
Lsi05g01321 828 SUPERFAMILY Pectin lyase-like 513 827 IPR011050 -
Lsi05g01321 828 Pfam Pectinesterase 516 813 IPR000070 GO:0030599|GO:0042545
Lsi05g01321 828 Pfam Pectinesterase 215 299 IPR000070 GO:0030599|GO:0042545
Lsi05g01321 828 SMART PMEI_2 332 478 IPR006501 GO:0004857
Lsi05g01321 828 SMART PMEI_2 31 177 IPR006501 GO:0004857
Lsi05g01321 828 Pfam Plant invertase/pectin methylesterase inhibitor 35 177 IPR006501 GO:0004857
Lsi05g01321 828 Pfam Plant invertase/pectin methylesterase inhibitor 336 478 IPR006501 GO:0004857
Lsi05g01321 828 PANTHER PECTINESTERASE 313 827 - -
Lsi05g01321 828 PANTHER PECTINESTERASE 313 827 - -
Lsi05g01321 828 PANTHER PECTINESTERASE 12 297 - -
Lsi05g01321 828 SUPERFAMILY Pectin lyase-like 212 297 IPR011050 -
Lsi05g01321 828 CDD PMEI-like_3 339 484 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00409 Lsi-Chr1:3476766 Lsi05g01321 Lsi-Chr5:20974152 4.55E-35 dispersed
Lsi02g02855 Lsi-Chr2:34762746 Lsi05g01321 Lsi-Chr5:20974152 2.22E-38 dispersed
Lsi05g00647 Lsi-Chr5:8220509 Lsi05g01321 Lsi-Chr5:20974152 1.37E-80 dispersed
Lsi05g01321 Lsi-Chr5:20974152 Lsi09g00498 Lsi-Chr9:5184085 9.40E-98 dispersed
Lsi10g00718 Lsi-Chr10:10056507 Lsi05g01321 Lsi-Chr5:20974152 2.42E-21 dispersed
Lsi05g01321 Lsi-Chr5:20974152 Lsi09g00673 Lsi-Chr9:7603919 2.26E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01321 K01051 - csv:101211449 901.353