Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01346 ATGGACAAGGAAAAGCCCCAATGCCATGGGGGAGGATTTCCGCACCAATCAAGTCGGTACTCGGGGTTTTCATCTGCTGAAACTAGTTTCAATGGAAAATCTGAGGCAACCTCGTCTTCAATGTCATTCCCTCCATTGGCTCCGAATACTAATTCTGATTGGGGTCAATCTGGCCGTGGAATGTCCACCGATTCCACTCGGTTCAGCCATGATATTAGTCGGATGCCTGAAAATCCGCGGCGAAATGTTGGTCATAGGCGTGCCCATTCAGAGATCCTGACTCTCCCAGATGATATTTGTTTCGACAGTGACCTTGGTATCATTGGCGGGGCTGATGGGCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCGACTGCTACTTCTGCAACTCAAGTGGGTGACTCATCTTCCCCCCTTGTAGAAGCTGCAGCAACTTCTACAGATGATATTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCTTGACAAACATCAAACCTGAGATGCTTGTCTCTGGTTCTGATGAAGCCTCTGCAGCTGATACCAAGAAAGCCATGTCAGCTGCAAAGCTTGCTGAGCTTGCATTGATTGACCCCAAACGTGCAAAAAGGATATGGGCAAACAGACAGTCAGCTGCACGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAAACATTGCAAACAGAGGCAACTTCTTTGTCTACTCAGTTGACCCTATTACAGAGAGATGCAAATGGTATCACTGCAGAGAATAGTGAACTAAAGCTGCGGTTGCAGACAATGGAACAGCAGGTTCACCTGCAAGACGCTTTGAATGAAGCACTGAAAGAAGAAATTCAGCATCTGAAAGTCTTGACTGGCCAAGCAATGCCAAACGGTAGATCAATTACAAACTTTGCTTCCTTTGGAGCCGGCCAACAATTCTATCCTCCAAACAATCAAGCAGTGCATACTTTGTTAACTGCGCAGCAGTTTCAACAACTTCAAATACAATCCCAACAGCAACAGCAACAGCATTTTCAGTACCAACAGCTGCATCAGCTTCAGCAACAACAGGCTGGAGACATCAGAATGAAAGGATCCATATCTCCTCAAAGCTCAAAAGACTCTGCATCGGAAACGAAGCCGCCTACCACTGGTTGA 1230 46.34 MDKEKPQCHGGGFPHQSSRYSGFSSAETSFNGKSEATSSSMSFPPLAPNTNSDWGQSGRGMSTDSTRFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGADGPSLSDDTEEDLLSMYLDMDKFNSSTATSATQVGDSSSPLVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKPEMLVSGSDEASAADTKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAMPNGRSITNFASFGAGQQFYPPNNQAVHTLLTAQQFQQLQIQSQQQQQQHFQYQQLHQLQQQQAGDIRMKGSISPQSSKDSASETKPPTTG 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21314142 21320558 + Lsi05G013460.1 Lsi05g01346 663838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01346 409 Gene3D - 221 273 - -
Lsi05g01346 409 Pfam bZIP transcription factor 222 270 IPR004827 GO:0003700|GO:0006355
Lsi05g01346 409 Coils Coil 238 307 - -
Lsi05g01346 409 MobiDBLite consensus disorder prediction 70 86 - -
Lsi05g01346 409 SUPERFAMILY Leucine zipper domain 222 272 IPR046347 GO:0003700|GO:0006355
Lsi05g01346 409 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 403 - -
Lsi05g01346 409 CDD bZIP_plant_RF2 223 272 IPR044759 GO:0003700|GO:0006355
Lsi05g01346 409 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 283 IPR004827 GO:0003700|GO:0006355
Lsi05g01346 409 MobiDBLite consensus disorder prediction 17 69 - -
Lsi05g01346 409 MobiDBLite consensus disorder prediction 1 86 - -
Lsi05g01346 409 MobiDBLite consensus disorder prediction 380 409 - -
Lsi05g01346 409 SMART brlzneu 218 282 IPR004827 GO:0003700|GO:0006355
Lsi05g01346 409 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01346 Lsi-Chr5:21314142 Lsi10g01485 Lsi-Chr10:18966125 7.34E-60 dispersed
Lsi10g01446 Lsi-Chr10:18546681 Lsi05g01346 Lsi-Chr5:21314142 1.29E-07 dispersed
Lsi05g01346 Lsi-Chr5:21314142 Lsi05g01348 Lsi-Chr5:21346432 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25367 PF00170 bZIP_1 1.00E-08 CL0018 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01346 - - csv:101212010 703.36