Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g01346 | ATGGACAAGGAAAAGCCCCAATGCCATGGGGGAGGATTTCCGCACCAATCAAGTCGGTACTCGGGGTTTTCATCTGCTGAAACTAGTTTCAATGGAAAATCTGAGGCAACCTCGTCTTCAATGTCATTCCCTCCATTGGCTCCGAATACTAATTCTGATTGGGGTCAATCTGGCCGTGGAATGTCCACCGATTCCACTCGGTTCAGCCATGATATTAGTCGGATGCCTGAAAATCCGCGGCGAAATGTTGGTCATAGGCGTGCCCATTCAGAGATCCTGACTCTCCCAGATGATATTTGTTTCGACAGTGACCTTGGTATCATTGGCGGGGCTGATGGGCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCCTCGACTGCTACTTCTGCAACTCAAGTGGGTGACTCATCTTCCCCCCTTGTAGAAGCTGCAGCAACTTCTACAGATGATATTGCTGTTGGTTTGAAGGAGAGGCCGAGAGTTAGACATCAGCATAGCCAGTCCATGGACGGCTTGACAAACATCAAACCTGAGATGCTTGTCTCTGGTTCTGATGAAGCCTCTGCAGCTGATACCAAGAAAGCCATGTCAGCTGCAAAGCTTGCTGAGCTTGCATTGATTGACCCCAAACGTGCAAAAAGGATATGGGCAAACAGACAGTCAGCTGCACGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAAACATTGCAAACAGAGGCAACTTCTTTGTCTACTCAGTTGACCCTATTACAGAGAGATGCAAATGGTATCACTGCAGAGAATAGTGAACTAAAGCTGCGGTTGCAGACAATGGAACAGCAGGTTCACCTGCAAGACGCTTTGAATGAAGCACTGAAAGAAGAAATTCAGCATCTGAAAGTCTTGACTGGCCAAGCAATGCCAAACGGTAGATCAATTACAAACTTTGCTTCCTTTGGAGCCGGCCAACAATTCTATCCTCCAAACAATCAAGCAGTGCATACTTTGTTAACTGCGCAGCAGTTTCAACAACTTCAAATACAATCCCAACAGCAACAGCAACAGCATTTTCAGTACCAACAGCTGCATCAGCTTCAGCAACAACAGGCTGGAGACATCAGAATGAAAGGATCCATATCTCCTCAAAGCTCAAAAGACTCTGCATCGGAAACGAAGCCGCCTACCACTGGTTGA | 1230 | 46.34 | MDKEKPQCHGGGFPHQSSRYSGFSSAETSFNGKSEATSSSMSFPPLAPNTNSDWGQSGRGMSTDSTRFSHDISRMPENPRRNVGHRRAHSEILTLPDDICFDSDLGIIGGADGPSLSDDTEEDLLSMYLDMDKFNSSTATSATQVGDSSSPLVEAAATSTDDIAVGLKERPRVRHQHSQSMDGLTNIKPEMLVSGSDEASAADTKKAMSAAKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQRDANGITAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAMPNGRSITNFASFGAGQQFYPPNNQAVHTLLTAQQFQQLQIQSQQQQQQHFQYQQLHQLQQQQAGDIRMKGSISPQSSKDSASETKPPTTG | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 21314142 | 21320558 | + | Lsi05G013460.1 | Lsi05g01346 | 663838 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g01346 | 409 | Gene3D | - | 221 | 273 | - | - | |
Lsi05g01346 | 409 | Pfam | bZIP transcription factor | 222 | 270 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi05g01346 | 409 | Coils | Coil | 238 | 307 | - | - | |
Lsi05g01346 | 409 | MobiDBLite | consensus disorder prediction | 70 | 86 | - | - | |
Lsi05g01346 | 409 | SUPERFAMILY | Leucine zipper domain | 222 | 272 | IPR046347 | GO:0003700|GO:0006355 | |
Lsi05g01346 | 409 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 403 | - | - | |
Lsi05g01346 | 409 | CDD | bZIP_plant_RF2 | 223 | 272 | IPR044759 | GO:0003700|GO:0006355 | |
Lsi05g01346 | 409 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 220 | 283 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi05g01346 | 409 | MobiDBLite | consensus disorder prediction | 17 | 69 | - | - | |
Lsi05g01346 | 409 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
Lsi05g01346 | 409 | MobiDBLite | consensus disorder prediction | 380 | 409 | - | - | |
Lsi05g01346 | 409 | SMART | brlzneu | 218 | 282 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi05g01346 | 409 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 403 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g01346 | Lsi-Chr5:21314142 | Lsi10g01485 | Lsi-Chr10:18966125 | 7.34E-60 | dispersed | |
Lsi10g01446 | Lsi-Chr10:18546681 | Lsi05g01346 | Lsi-Chr5:21314142 | 1.29E-07 | dispersed | |
Lsi05g01346 | Lsi-Chr5:21314142 | Lsi05g01348 | Lsi-Chr5:21346432 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25367 | PF00170 | bZIP_1 | 1.00E-08 | CL0018 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g01346 | - | - | csv:101212010 | 703.36 |