Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01348 ATGGAGAAAGACAAACCCCAAAGCTATTCTGGTGGATTTCCGCCACCATCAAGTCGTTACTCAGGTCTTTCACCAACTGGAAGCATTTTCAGTGGAAAATCTGAGGCAACTTCATCTTCAATGTTGCTTCCTCCAATGCCTTCGGGTGCTCTTTCCGATTCAGGTCAATTTGGTCATGGAATGCCCACTGATTCTAATCGGTTCAGCCATGATATTAGTCGAATGCCTGATAACCCACCGAGAAATATTGGTCACAGACGTGCCCATTCAGAAATACTGACCCTTCCTGATGATATTTGTTTTGACAATGACCTTGGTGTCATTGGTAGTGCTGATGGCCCTTCTTTTTCTGATGATACCGAGGAAGATTTGTTGTCCATGTACCTCGACATGGATAAATTCAATTCTTCGACTGCCACCTCAGCAATTCAAGTTGGCGAGTCATCTTCTGCTGTTGGAGAAGCAATATCAACTTCTACTTCAACAATTGGAGCAGCAACCTCTAAAGATGCTGCTGCTGTTGGGTTGAAGGAGAGGCCGAGAGTTAGACACCAGCATAGCCAGTCCATGGATGGCTTGACAACCATAAAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAAGCCTCTGCAGCCGATTCCAAGAAAGCCATGTCAGCTACAAAGCTTGCTGAGCTTGCGCTAATTGACCCCAAACGTGCTAAGAGGATATGGGCAAATCGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGTTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTACAAACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGATACAAACGGTCTTTCTGCTGAGAACAATGAACTAAAGCTGCGATTGCAGACAATGGAGCAGCAGAATATGGATTGGGGGTTGAGTACAACTCTAAATGAAGCACTCAAAGAGGAAATTCAGCATTTGAAAGTATTGACTGGCCAAGCAATCCCAAATGGTGGATCAGTGACAAACTTTGCTTCCTTTGGATCTGGCCAACCATTTTACCCAAACAATCAAGCAATGCACACTTTGTTAACTGCTCAGCAGTTTCAACAACTTCAAATCCACTCACAGCAACAGCAGCAGCAGCAACAACAACAACATTACCAGTACCATCAGCTTCATCAGCAACCAACAGGAGATAACAAATCGAAAGGATCGACATCTTCTCCAAGTCCGAAAGACAACAACACATCAGATACACACATGAATAAGATGGCTCCATTCATATCAAGATGGGTAATGAATAGAGTCCCTATCTATGAGATTTGTGACGCTTCCGTGAGCGATCATCTCTATCATTGGAATCTCTTCTGCAAGATCGATCCTTGTCTGAAGAGCTCCTCTGATAAAGATCTTCCTTCTCAGCAGATCTCCTCTGATAATAATCTTCCTTCTCAGAAAATCTCATGTGGGAGGAATAATCATCCCTGTCGTTTGAGGCCCTCCTAG 1497 44.22 MEKDKPQSYSGGFPPPSSRYSGLSPTGSIFSGKSEATSSSMLLPPMPSGALSDSGQFGHGMPTDSNRFSHDISRMPDNPPRNIGHRRAHSEILTLPDDICFDNDLGVIGSADGPSFSDDTEEDLLSMYLDMDKFNSSTATSAIQVGESSSAVGEAISTSTSTIGAATSKDAAAVGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEASAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSAENNELKLRLQTMEQQNMDWGLSTTLNEALKEEIQHLKVLTGQAIPNGGSVTNFASFGSGQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQQHYQYHQLHQQPTGDNKSKGSTSSPSPKDNNTSDTHMNKMAPFISRWVMNRVPIYEICDASVSDHLYHWNLFCKIDPCLKSSSDKDLPSQQISSDNNLPSQKISCGRNNHPCRLRPS 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21346432 21356072 + Lsi05G013480.1 Lsi05g01348 663840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01348 498 Coils Coil 247 302 - -
Lsi05g01348 498 SUPERFAMILY Leucine zipper domain 231 282 IPR046347 GO:0003700|GO:0006355
Lsi05g01348 498 MobiDBLite consensus disorder prediction 1 84 - -
Lsi05g01348 498 MobiDBLite consensus disorder prediction 465 488 - -
Lsi05g01348 498 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 8 416 - -
Lsi05g01348 498 Gene3D - 230 283 - -
Lsi05g01348 498 MobiDBLite consensus disorder prediction 465 498 - -
Lsi05g01348 498 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 8 416 - -
Lsi05g01348 498 CDD bZIP_plant_RF2 232 281 IPR044759 GO:0003700|GO:0006355
Lsi05g01348 498 MobiDBLite consensus disorder prediction 11 45 - -
Lsi05g01348 498 Pfam bZIP transcription factor 231 285 IPR004827 GO:0003700|GO:0006355
Lsi05g01348 498 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 229 292 IPR004827 GO:0003700|GO:0006355
Lsi05g01348 498 SMART brlzneu 227 291 IPR004827 GO:0003700|GO:0006355
Lsi05g01348 498 MobiDBLite consensus disorder prediction 372 418 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00156 Lsi-Chr5:2281823 Lsi05g01348 Lsi-Chr5:21346432 5.78E-16 dispersed
Lsi05g01348 Lsi-Chr5:21346432 Lsi10g01485 Lsi-Chr10:18966125 4.11E-53 dispersed
Lsi05g01346 Lsi-Chr5:21314142 Lsi05g01348 Lsi-Chr5:21346432 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25368 PF00170 bZIP_1 2.20E-08 CL0018 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01348 - - csv:101210291 675.241