Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g01348 | ATGGAGAAAGACAAACCCCAAAGCTATTCTGGTGGATTTCCGCCACCATCAAGTCGTTACTCAGGTCTTTCACCAACTGGAAGCATTTTCAGTGGAAAATCTGAGGCAACTTCATCTTCAATGTTGCTTCCTCCAATGCCTTCGGGTGCTCTTTCCGATTCAGGTCAATTTGGTCATGGAATGCCCACTGATTCTAATCGGTTCAGCCATGATATTAGTCGAATGCCTGATAACCCACCGAGAAATATTGGTCACAGACGTGCCCATTCAGAAATACTGACCCTTCCTGATGATATTTGTTTTGACAATGACCTTGGTGTCATTGGTAGTGCTGATGGCCCTTCTTTTTCTGATGATACCGAGGAAGATTTGTTGTCCATGTACCTCGACATGGATAAATTCAATTCTTCGACTGCCACCTCAGCAATTCAAGTTGGCGAGTCATCTTCTGCTGTTGGAGAAGCAATATCAACTTCTACTTCAACAATTGGAGCAGCAACCTCTAAAGATGCTGCTGCTGTTGGGTTGAAGGAGAGGCCGAGAGTTAGACACCAGCATAGCCAGTCCATGGATGGCTTGACAACCATAAAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAAGCCTCTGCAGCCGATTCCAAGAAAGCCATGTCAGCTACAAAGCTTGCTGAGCTTGCGCTAATTGACCCCAAACGTGCTAAGAGGATATGGGCAAATCGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGTTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTACAAACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGAGATACAAACGGTCTTTCTGCTGAGAACAATGAACTAAAGCTGCGATTGCAGACAATGGAGCAGCAGAATATGGATTGGGGGTTGAGTACAACTCTAAATGAAGCACTCAAAGAGGAAATTCAGCATTTGAAAGTATTGACTGGCCAAGCAATCCCAAATGGTGGATCAGTGACAAACTTTGCTTCCTTTGGATCTGGCCAACCATTTTACCCAAACAATCAAGCAATGCACACTTTGTTAACTGCTCAGCAGTTTCAACAACTTCAAATCCACTCACAGCAACAGCAGCAGCAGCAACAACAACAACATTACCAGTACCATCAGCTTCATCAGCAACCAACAGGAGATAACAAATCGAAAGGATCGACATCTTCTCCAAGTCCGAAAGACAACAACACATCAGATACACACATGAATAAGATGGCTCCATTCATATCAAGATGGGTAATGAATAGAGTCCCTATCTATGAGATTTGTGACGCTTCCGTGAGCGATCATCTCTATCATTGGAATCTCTTCTGCAAGATCGATCCTTGTCTGAAGAGCTCCTCTGATAAAGATCTTCCTTCTCAGCAGATCTCCTCTGATAATAATCTTCCTTCTCAGAAAATCTCATGTGGGAGGAATAATCATCCCTGTCGTTTGAGGCCCTCCTAG | 1497 | 44.22 | MEKDKPQSYSGGFPPPSSRYSGLSPTGSIFSGKSEATSSSMLLPPMPSGALSDSGQFGHGMPTDSNRFSHDISRMPDNPPRNIGHRRAHSEILTLPDDICFDNDLGVIGSADGPSFSDDTEEDLLSMYLDMDKFNSSTATSAIQVGESSSAVGEAISTSTSTIGAATSKDAAAVGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEASAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSAENNELKLRLQTMEQQNMDWGLSTTLNEALKEEIQHLKVLTGQAIPNGGSVTNFASFGSGQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQQHYQYHQLHQQPTGDNKSKGSTSSPSPKDNNTSDTHMNKMAPFISRWVMNRVPIYEICDASVSDHLYHWNLFCKIDPCLKSSSDKDLPSQQISSDNNLPSQKISCGRNNHPCRLRPS | 498 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 21346432 | 21356072 | + | Lsi05G013480.1 | Lsi05g01348 | 663840 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g01348 | 498 | Coils | Coil | 247 | 302 | - | - | |
Lsi05g01348 | 498 | SUPERFAMILY | Leucine zipper domain | 231 | 282 | IPR046347 | GO:0003700|GO:0006355 | |
Lsi05g01348 | 498 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
Lsi05g01348 | 498 | MobiDBLite | consensus disorder prediction | 465 | 488 | - | - | |
Lsi05g01348 | 498 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 8 | 416 | - | - | |
Lsi05g01348 | 498 | Gene3D | - | 230 | 283 | - | - | |
Lsi05g01348 | 498 | MobiDBLite | consensus disorder prediction | 465 | 498 | - | - | |
Lsi05g01348 | 498 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 8 | 416 | - | - | |
Lsi05g01348 | 498 | CDD | bZIP_plant_RF2 | 232 | 281 | IPR044759 | GO:0003700|GO:0006355 | |
Lsi05g01348 | 498 | MobiDBLite | consensus disorder prediction | 11 | 45 | - | - | |
Lsi05g01348 | 498 | Pfam | bZIP transcription factor | 231 | 285 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi05g01348 | 498 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 229 | 292 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi05g01348 | 498 | SMART | brlzneu | 227 | 291 | IPR004827 | GO:0003700|GO:0006355 | |
Lsi05g01348 | 498 | MobiDBLite | consensus disorder prediction | 372 | 418 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g00156 | Lsi-Chr5:2281823 | Lsi05g01348 | Lsi-Chr5:21346432 | 5.78E-16 | dispersed | |
Lsi05g01348 | Lsi-Chr5:21346432 | Lsi10g01485 | Lsi-Chr10:18966125 | 4.11E-53 | dispersed | |
Lsi05g01346 | Lsi-Chr5:21314142 | Lsi05g01348 | Lsi-Chr5:21346432 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25368 | PF00170 | bZIP_1 | 2.20E-08 | CL0018 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g01348 | - | - | csv:101210291 | 675.241 |