Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01353 ATGGAGAAGGAATTCTTCATGAATGATGCTGGATGCAGTTTTTATGGGATGGAAATCCAACCCAATGAGCTGAACTCGAGTGGGTTGTTTAATCCCAATTGGGAAAATTCGATGGATCAGAGCGATCTCTTTGAGTCTACTTTGAGTTCGATTGTGTCTTCTCCGGCGAATTCTCACGTTATCGGCGGTGGCGGTGGCGGTGGAGACAACTTGATGATGCGAGAATTGATCGGAAGACTTGGGAGTATTTGCAATTCCGGTGAGATTTCGCCTCATTCTTACATTGGTGGAACGAATAACAATAGTGCGAACACTTCTTGTTACAATACGCCTTTGAATTCTCCTCCTAAGCTTAATTTGTCGTCAATCATGGAGTCTCAGATCAGAGGGAATTTGATTCCCCATCATCAAAATCTGGCCCCATTTTCAGCTGACCCTGGTTTTGCTGAGAGAGCTGCGAGATTTTCTTGCTTTGGGAACAGGAATCTTGGGGGATTGAATGGCCAATTGGGTTCTAATGAAACTCAAGAATTGAGTAACAGACCAATGGCTGGAGCTGGAGTGGAATCTGGAAAGCTTTCTAGAGTTTCAAGTAACAAATCGTTCAACATTGGTGGAATTGGATCTCAAATGGGGGTTCAAGAAGGCGAGCAAAGCCCAGTTCAAAAGGGGAATTCAATGCCAATCCCTAACAAGAAAGTACTGAACAGGTTTTCGAGGTCTTCGACCCCTGAAAATGCCGGTGATTCGCGGGAAGGATCTTCAGTTTCCGAGCAGATTACAGTTGGGGAATTGGGTTTCAAAGGTAAAGCCGAAGCCAACACTAGGAAAAGGAAATCACTTCAAACTGGTCAAGCAAAAGATGTGAAGGCTGCAGTAGAGAACCATGAATCAAATGGAAAGAAAATCAAGCCAGATGAAGTTACTAAGAAAGAGATTGATGCTACAAAAGGGAAGTCAGAGGCAAAAGATGCCACAAAAGCTTCAGGGGATGCAAATCAGAAACAAAACAATGATAATTCAAAGCCTCCTGAGCCTCCAAAGGATTATATCCATGTCAGAGCTAGAAGGGGTCAAGCTACAGATAGCCACAGTTTGGCTGAAAGAGTTCGACGCGAGAAAATCAGCAAACGGATGAAGTTTCTTCAGGATCTCGTCCCTGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATTATAAACTATGTTCAGTCTTTGCAGCGCCAAGTCGAGTTTCTTTCAATGAAATTGGCAACTGTCAATCCAAGGATGGATTTTAACATGGAGACCCTTGTGCCAAAGGATATCTTTAAAGGCCCCGGTTCGTCGCCTCATACGGTTTACCCTATGGATTCATCTGTGCCCCAATTTGCATATGATTATCAATCTATGCACATGCCTCCTCTTCATAGTAGCATTTCTAATGGGACAGAGAAACAATTCTCGGTTGCCTCGGCAAGTGGTGTGATGCAAAGAAATCTAAGCGGGCAAATGCCGAGCGGATACAACGAAGACGTGAATGGAATCCAAATTTCAAAGTTCTGGGAAGATGAACTCCACACTGTTGTTCAGATGGGATATGGACAAAACCAACTGCAGAGTGCTAATGATGAGATGAAAAGTGAATTGTAA 1641 43.63 MEKEFFMNDAGCSFYGMEIQPNELNSSGLFNPNWENSMDQSDLFESTLSSIVSSPANSHVIGGGGGGGDNLMMRELIGRLGSICNSGEISPHSYIGGTNNNSANTSCYNTPLNSPPKLNLSSIMESQIRGNLIPHHQNLAPFSADPGFAERAARFSCFGNRNLGGLNGQLGSNETQELSNRPMAGAGVESGKLSRVSSNKSFNIGGIGSQMGVQEGEQSPVQKGNSMPIPNKKVLNRFSRSSTPENAGDSREGSSVSEQITVGELGFKGKAEANTRKRKSLQTGQAKDVKAAVENHESNGKKIKPDEVTKKEIDATKGKSEAKDATKASGDANQKQNNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMETLVPKDIFKGPGSSPHTVYPMDSSVPQFAYDYQSMHMPPLHSSISNGTEKQFSVASASGVMQRNLSGQMPSGYNEDVNGIQISKFWEDELHTVVQMGYGQNQLQSANDEMKSEL 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21424922 21428052 + Lsi05G013530.1 Lsi05g01353 663845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01353 546 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 35 537 IPR024097 GO:0006355
Lsi05g01353 546 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 357 429 IPR036638 GO:0046983
Lsi05g01353 546 MobiDBLite consensus disorder prediction 205 226 - -
Lsi05g01353 546 Gene3D - 356 430 IPR036638 GO:0046983
Lsi05g01353 546 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 359 409 IPR011598 GO:0046983
Lsi05g01353 546 CDD bHLH_AtBPE_like 349 434 - -
Lsi05g01353 546 MobiDBLite consensus disorder prediction 270 328 - -
Lsi05g01353 546 PANTHER TRANSCRIPTION FACTOR BHLH78-LIKE ISOFORM X1 35 537 - -
Lsi05g01353 546 MobiDBLite consensus disorder prediction 235 261 - -
Lsi05g01353 546 SMART finulus 365 415 IPR011598 GO:0046983
Lsi05g01353 546 Pfam Helix-loop-helix DNA-binding domain 363 410 IPR011598 GO:0046983
Lsi05g01353 546 MobiDBLite consensus disorder prediction 205 350 - -
Lsi05g01353 546 MobiDBLite consensus disorder prediction 329 343 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02133 Lsi-Chr2:27636934 Lsi05g01353 Lsi-Chr5:21424922 5.90E-90 dispersed
Lsi05g00376 Lsi-Chr5:4738511 Lsi05g01353 Lsi-Chr5:21424922 1.49E-32 dispersed
Lsi05g01353 Lsi-Chr5:21424922 Lsi09g00778 Lsi-Chr9:8827021 1.32E-63 dispersed
Lsi05g01353 Lsi-Chr5:21424922 Lsi11g01112 Lsi-Chr11:19468218 4.30E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25369 PF00010 HLH 1.20E-05 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01353 - - csv:101211278 986.867