Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01354 ATGAACAATGTGGACGAGGAAATGGGCTTGCCTGAGGACGAAGCGGAGAGCTCAGTTCTGAAGGTTGGTGAAGAGAGGGAGATTGGAAAGAATGGGCTGAAGAAGAAACTTGTTAAAGAAGGTGAAGGATGGGAAACTCCCGACACTGGTGATGAAGTTGAAGTGCATTATACGGGAACCCTTCTTGATGGAACCCAATTCGATTCGAGCCGTGACCGAGGAACGCCTTTCAAGTTCAAGCTCGGGGAAGGGCAAGTGATTAAAGGGTGGGATGAAGGTATTAGAACAATGAAAAAGGGTGAAAATGCAGTTTTCACGATACCCCCTGAATTGGCCTACGGAGAGTCCGGCTCTCCTCCAACAATTCCACCGAACGCTACTCTTCAATTTGATGTTGAGCTACTTTCATGGCACAGCGTCAAAGACATCTGTCAAGATGGAGGAATCTTGAAAAAGATTCTTGTCAAAGGAGACGGTTGGGACAAACCGAAGGATCTAGACGAAGTATTCGTTCTTTACGAGGCTCGTCTTGAAGATGGTACACTGATCTCAAAGTCTGATGGGGTCGAATTCACTGTTGAGAAGGGTAGGGTACTTCTGTCCTGCCTTGGCAACATCTGTGAAGACGATGAAGAAGGGAGAGAAAGCATTGTTGACTGTGAGGCCACTATGCCTGGAGCTGGAGAAGAAGGTGCTGTACCTCCGAATGCCACACTTCAGATAACCCTTCAATTGGTTTCTTGGAAGACTGTTACAGAGGTTACTAAGGACAAAAAGGTCCTGAAGAAGACCCAGAAGGAGGGAGAAGGATATGATCAGCCAAATGAGGGAGCAGTGGTGCAAGCTAACAACATTGAGCTTATGTTCTTGCCAGTGAAACTTACCGGTAAACTGGCTGACGGGACGATTTTTACGAAGAAGGGCGACGATGAGAAGCCTTTTGAGTTCAAAACTGACGAAGAACAAGTCATTGAAGGACTCGATTTGGCTGTGAGAAAGATGAAGAAGGGAGAAATTGCCTTGGTGACCATCCATCCACAATATGCTTTTGGATCTTCCGATTCATCCCAAGATCTAGCTGTGGTTCCTGCAAACTCAACAGTATATTATGAAGTTGAGCTAGTTTCATTCGTCAAAGAAAAAGAATCTTGGGATCTGAACACAGCAGAAGAGAAAATAGGAGCAGCAGGTAAAAAGAAGGAAGAAGGAAATGTTTTGTTCAAAGCTGGAAAATATGACAGAGCATCAAGAAGATATGAAAAGGCTGTGCGCTACATTGAATATGATACTTCTTTCAACGATGAGGAGAAGCAACAGAGTAAGGCACTAAAGATTTCGTGCAACCTCAATAATGCTGCGTGCAAACTAAAAGTCAAAGATTACAAGCAAGCAGAGAAGCTCTGTACAAAGGTGTTGGAACTTGACAGTAGGAACGTGAAAGCTCTCTATAGAAGGGCTCAAGCATACATTCAACTTATCGAATACAGGCACTTGAAAGAGAAAGTGAGGGAATACAACAAGAGAGATGCACAGTTTTATGGCAACATTTTTGCAAAAATGAACAAGTTGGAGCAGGCGAAGTCTGCTCCAAGAAACGCTATCTTGCGAGACACCCATGCCGCCGAACCCCCATCTTCTTCGCCGAGCCCTAGCGGCGGAATCAAGGGTAGACCCCCTCGGAAACCCAAGTCATCTAAGGAGAATGCTCCGCCTTCAGATCCGAACTCCATGGTTCCGGATTCCAAACCCTCGCCGGCTAAGTTGAAGAGCCCGCTCCCACCTAGGCCTCCGTCTTCCAACCCACTCAAGCGGAAGCTCAGCATGGAGACCGTTCCAGAGAATTCGATTCCTGGGTTGTCTGATTCTGGTGTGAAGGTGGTAGTGCGCATGAGGCCGCCGTGCAAGGACAGAGATGAAGGGGATAATATAGTACAGAATGTTACCGGTGATTCTTTGTCAATTAATGGACAAACAGGCAACACAGGCATGATCTTTAGTGAACTCTGTAGTAGCTCTTTGATGGACATTGGACAATATGGGAGGCTTGATATCTTCCAGCTTGTAGGAGAGCCTCTTGTTGAAAATTGTATGGCAGGTTTCAACAGTTCCGTATTTGCATATGGGCAAACGGGAAGTGGAAAGACATATACCATGTGGGGTCCAGCCAATTCTTTGTCAGATGACAATTTATTAAGCGAACAGAAAGGCTTAACTCCCCGTGTTTTTGAACGACTCTTTGCTCGTATAAACGAGGAACAAGTGAAGCATGCTGACAAGTTACTCAAGTATCAGTGTTACTGTTCTTTTCTCGAGGTTAGACAACAGTTGCCTTCCACAATTTACAATGAGCAAATCACTGATTTATTGGATCCAAATCAGAGAAACCTCCAGATTAGAGAAGATGTAAAATCTGGTGTTTATGTTGAAAATTTAACAGAGGAGTGTGCATCCACAATGGCAGATGTTACTCGGCTTTTAATGAAGGGTTTATCAAATAGGAGGACTGGTGCAACAAGTATTAATTCTGAGAGTTCGCGGTCACATACTGTTTTTACCTGTGTTGTTGAATCCCGATCCAAGAGACTGGCAGATGGTTTAAGTAGCTTTAAAACAAGTAGAATAAATCTTGTTGATTTAGCTGGTTCTGAGAGGCAGAAGCTAACAGGTGCAGCTGGGGAGCGCTTGAAGGAAGCAGGCAATATCAACAGATCACTCTCACAACTCGGGAATCTTATTAATATTCTTGCCGAGATTTCTCAAACTGGAAAACAAAGGCACATCCCGTACAGAGACTCCAGGCTCACTTTTTTATTGCAAGAATCTCTCGGGGGAAATGCAAAATTAGCGATGGTTTGTGCCATTTCTCCATCACAAAGCTGCAAGAGTGAAAGTTTTAGCACCTTGAGGTTTGCCCAGCGTGCCAAAGCTATAAAAAACAAAGCTATTGTTAATGAAGTTATGCAAGATGATGTGAATCACTTACGTGAAGTGATACGGCAGCTTAGGGATGAACTACACCGACTAAAGTCGAATGGAAATAGTTTAAATGACACAAATGGAGGTCACTCTGCAGCATGGATCCGTAGGAGTTTAAATCTACTGAAGTCTAGCATAAGTCGTCCTATCGCATTACCTCATGTGGATGATGATGGTGATGAAGAAATGGAAATTGATGAGGAAGCTGTTGAGAAGCTCTGTGATCAACTGGACAAAAAAAAGACAGGTTCAGAGGCTAGTGAAGGAAAGGAAGCTGAGACTGTTAAATCAGGTTCCTCAATTGCCTCAGAAGGAAATGAGTTAACTAAGTTTCAGCCATGTGCTTCTGGAAGTGAATGTCGAAAGGAAATCTCTGATGATATAGATGTAAACATGGAAGAGGAAACATTTGCACAAGAGCCTGTTTACGATACCCCAGTATGTTCTGTTGTCGATGTGCCAAACCATAACCTTGAAGCAGAAAGTCAAATGACAACAGACTCGCCTGACCAAATTCTCATAGGTGAACCCTCGGATACTACTAGTATTATGAGGTCTTCAATGGAGAGAGTGAAAAGTGGGGAAGTAAAAACTTCAGGAGATGGCCCTTTGTGTACATCCTCTGAACCTCTCAGTGGATTTCAGGCTACCACGTGCGAATTAGATACACTCAACAATTCCTCAAATGGGATTCTTAGTTGTGTTTCTCCTCCAGGCCTCAGCATAGTTCCTTGTGATGTGTCCCCAACTCTCAAATCCCCTACTCCAAGCGTTTCGCCTAGAATCAGTGAAAGCAGGAAAAGCTTGAGGACTTCAACGATGTTGTCTGCTTCACAGAAAGATCTTCAGGCTGAGACTAAGCTGGGCGTAGATCATATGCAAAAATCATGTGACAAGTCCTTAAAAAGGAGCTCCGCTAATGCATTATTCCTGTTGTCTACTCAGAGTAAGAATACTGGTGTAACAACAGAACAGTTGGCTGCAAGCATCCGCAATGGGCTTGAAATTATTGATAGTTGTCGTCAGAGTTCAGCATTGAGAAGGTCTTCATTCAGATTTTCATATAAACCTGCTGAAAAGGTTAATGTGCCAATAAACAAAATTGATGTTGGCGTGCAAACATCTTGCGATGATGAGGCTGCCGGTGAAAACCTTGTTATGTGCACTAGTTGCAAAATTAGAAAGCAGCTGGAGGTTAGAGAGGAGGATGGCAGTTCAGATCTGCAATTAGTACCTGTGGATGGTACAGACTCTGCCGAGAAATCCAGGATACAAGTTCCTAAAGCAGTTGAGAAAGTTCTTGCTGGGGCTATCAGAAGAGAAATGGCACTTGAAGAGTACTGCAACAAGCAAGCATTTGATATAAGTCAACTCAACCGTTTGGTACAACAGTACAAGCATGAGAGAGAATGCAATGCTGTGCTTGGGCAAGCCAGAGAGGACAAAATTCTTCGCCTTGAGAGCCTCATGGACGGTGTTTTACCAACTGAGGATTTCATGGAGGAGGAACTGGTGTCCCTCACACATGAGCATAAGGTTTTGAAGGAAAAATATGAGAATCACCCTGAAGTCCTACAGACACGAATGGAGTTGAAAAAAGTTCAAGATGAATTGCAAAGTTGCAGGAATTTCTATGACTTGGGTGAGAGAGAAGTGCTAATGGAAGAGATTCAGGATTTAAGAAGTCAGCTGCAATATTACATTGATTCACCCTCCACATCCTCGCGAAAGCAAAAAGCACTTTTACAATTGACTTATTCTGAACCTAGTTGTGCTCCACCTCTTGGTGCAATTCCTGAATCAACAGAAGAGAGTGCTGAGGAGAAACTTGAACAGGAGAGAGCTCGTTGGACTGAGGAGGAGAGCAAATGGATCTCTCTTTCAGAAGAACTCAGAAGTGAACTTGAAGCGAGCAGGTTGTTAGCAGATAAAAGAAAACGAGAGTTTGAAGCTGAAAAGAAATGTGCTGAAGAGCTGGAGGAAGCTATGCAAATGGCTATGGCAGCGCATGCACGGTTGCTGGAACAGTATGCAGACTTGGAAGAAAAGCACATGCAATTGCTTTTAAGACATAGAAAGATACAGGATGGAATTGGGGATGTAAAAAAGGCAGCTTCTAGAGCAGGAGTGAAGGGAGCAGAGTCCAAGTTCATAAATGCCCTTGCTGCTGAAATTTCAGCACTTAAAGTTGAAAGAGAGCGAGAAAGGCGCTATCTAAGAGATGAGAACAAGGGACTTCAAGCTCAATTGAGAGATACTGCTGAAGCTGTGCAGGCAGCAGGTGAATTGCTTGTGCGGCTCAAAGAGGCAGAGGAGGGAGTTGCTGCTGCTCAGGTGAAAGGGACGCGAGCAATTGAAGCTGAGCAAGAAGTCGAGAAGGCCTACAAACAGATTGATAAATTGAAGCAAAAACATGAAAGGGAAATCAGCACACTCAATGCTCTCATCACAGATTCTCGTTTACCAAAGGAAGCTATACGACCTGCTTATGATGATGAAATTGGCAAAGCCAAATACGACATAGATGAATCGCATGATCAACGTTGGAGAGAGGAATTTGAGCCATTCTACAATGGTGAAGATGATAGGAGGCAATGTTCAGAAGGATCAGAGAAGTATGTCTGTGAAACCAAACAGCCAGTTAGTTCATTGGCACTTCTTTTCTCCATATAA 5649 43.81 MNNVDEEMGLPEDEAESSVLKVGEEREIGKNGLKKKLVKEGEGWETPDTGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFKLGEGQVIKGWDEGIRTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDICQDGGILKKILVKGDGWDKPKDLDEVFVLYEARLEDGTLISKSDGVEFTVEKGRVLLSCLGNICEDDEEGRESIVDCEATMPGAGEEGAVPPNATLQITLQLVSWKTVTEVTKDKKVLKKTQKEGEGYDQPNEGAVVQANNIELMFLPVKLTGKLADGTIFTKKGDDEKPFEFKTDEEQVIEGLDLAVRKMKKGEIALVTIHPQYAFGSSDSSQDLAVVPANSTVYYEVELVSFVKEKESWDLNTAEEKIGAAGKKKEEGNVLFKAGKYDRASRRYEKAVRYIEYDTSFNDEEKQQSKALKISCNLNNAACKLKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLIEYRHLKEKVREYNKRDAQFYGNIFAKMNKLEQAKSAPRNAILRDTHAAEPPSSSPSPSGGIKGRPPRKPKSSKENAPPSDPNSMVPDSKPSPAKLKSPLPPRPPSSNPLKRKLSMETVPENSIPGLSDSGVKVVVRMRPPCKDRDEGDNIVQNVTGDSLSINGQTGNTGMIFSELCSSSLMDIGQYGRLDIFQLVGEPLVENCMAGFNSSVFAYGQTGSGKTYTMWGPANSLSDDNLLSEQKGLTPRVFERLFARINEEQVKHADKLLKYQCYCSFLEVRQQLPSTIYNEQITDLLDPNQRNLQIREDVKSGVYVENLTEECASTMADVTRLLMKGLSNRRTGATSINSESSRSHTVFTCVVESRSKRLADGLSSFKTSRINLVDLAGSERQKLTGAAGERLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSESFSTLRFAQRAKAIKNKAIVNEVMQDDVNHLREVIRQLRDELHRLKSNGNSLNDTNGGHSAAWIRRSLNLLKSSISRPIALPHVDDDGDEEMEIDEEAVEKLCDQLDKKKTGSEASEGKEAETVKSGSSIASEGNELTKFQPCASGSECRKEISDDIDVNMEEETFAQEPVYDTPVCSVVDVPNHNLEAESQMTTDSPDQILIGEPSDTTSIMRSSMERVKSGEVKTSGDGPLCTSSEPLSGFQATTCELDTLNNSSNGILSCVSPPGLSIVPCDVSPTLKSPTPSVSPRISESRKSLRTSTMLSASQKDLQAETKLGVDHMQKSCDKSLKRSSANALFLLSTQSKNTGVTTEQLAASIRNGLEIIDSCRQSSALRRSSFRFSYKPAEKVNVPINKIDVGVQTSCDDEAAGENLVMCTSCKIRKQLEVREEDGSSDLQLVPVDGTDSAEKSRIQVPKAVEKVLAGAIRREMALEEYCNKQAFDISQLNRLVQQYKHERECNAVLGQAREDKILRLESLMDGVLPTEDFMEEELVSLTHEHKVLKEKYENHPEVLQTRMELKKVQDELQSCRNFYDLGEREVLMEEIQDLRSQLQYYIDSPSTSSRKQKALLQLTYSEPSCAPPLGAIPESTEESAEEKLEQERARWTEEESKWISLSEELRSELEASRLLADKRKREFEAEKKCAEELEEAMQMAMAAHARLLEQYADLEEKHMQLLLRHRKIQDGIGDVKKAASRAGVKGAESKFINALAAEISALKVERERERRYLRDENKGLQAQLRDTAEAVQAAGELLVRLKEAEEGVAAAQVKGTRAIEAEQEVEKAYKQIDKLKQKHEREISTLNALITDSRLPKEAIRPAYDDEIGKAKYDIDESHDQRWREEFEPFYNGEDDRRQCSEGSEKYVCETKQPVSSLALLFSI 1882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21432590 21450168 - Lsi05G013540.1 Lsi05g01354 663846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01354 1882 PANTHER CENTROMERE PROTEIN E 588 1855 - -
Lsi05g01354 1882 PRINTS Kinesin heavy chain signature 838 855 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi05g01354 1882 PRINTS Kinesin heavy chain signature 699 720 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi05g01354 1882 PRINTS Kinesin heavy chain signature 873 891 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi05g01354 1882 PRINTS Kinesin heavy chain signature 927 948 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi05g01354 1882 Coils Coil 1648 1682 - -
Lsi05g01354 1882 SMART kinesin_4 621 985 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi05g01354 1882 Pfam Kinesin motor domain 681 977 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi05g01354 1882 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 291 375 IPR001179 GO:0003755
Lsi05g01354 1882 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 45 135 IPR001179 GO:0003755
Lsi05g01354 1882 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 287 378 IPR001179 GO:0003755
Lsi05g01354 1882 PANTHER KINESIN-LIKE PROTEIN KIN-12B 588 1855 - -
Lsi05g01354 1882 ProSitePatterns Kinesin motor domain signature. 872 883 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lsi05g01354 1882 MobiDBLite consensus disorder prediction 1 23 - -
Lsi05g01354 1882 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 138 IPR001179 GO:0003755
Lsi05g01354 1882 MobiDBLite consensus disorder prediction 1243 1268 - -
Lsi05g01354 1882 SUPERFAMILY TPR-like 395 534 IPR011990 GO:0005515
Lsi05g01354 1882 Gene3D - 141 249 IPR046357 GO:0003755
Lsi05g01354 1882 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 166 249 IPR001179 GO:0003755
Lsi05g01354 1882 SUPERFAMILY FKBP-like 19 149 - -
Lsi05g01354 1882 Coils Coil 1489 1509 - -
Lsi05g01354 1882 SMART tpr_5 445 478 IPR019734 GO:0005515
Lsi05g01354 1882 SMART tpr_5 396 429 IPR019734 GO:0005515
Lsi05g01354 1882 MobiDBLite consensus disorder prediction 538 618 - -
Lsi05g01354 1882 Coils Coil 984 1018 - -
Lsi05g01354 1882 ProSiteProfiles Kinesin motor domain profile. 623 977 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lsi05g01354 1882 Gene3D - 23 140 IPR046357 GO:0003755
Lsi05g01354 1882 Coils Coil 1776 1807 - -
Lsi05g01354 1882 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 988 IPR027417 -
Lsi05g01354 1882 Gene3D - 250 380 IPR046357 GO:0003755
Lsi05g01354 1882 MobiDBLite consensus disorder prediction 586 600 - -
Lsi05g01354 1882 MobiDBLite consensus disorder prediction 1072 1096 - -
Lsi05g01354 1882 Gene3D Kinesin motor domain 622 1005 IPR036961 -
Lsi05g01354 1882 SUPERFAMILY FKBP-like 254 397 - -
Lsi05g01354 1882 SUPERFAMILY FKBP-like 142 252 - -
Lsi05g01354 1882 Gene3D Tetratricopeptide repeat domain 381 533 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01496 Lsi-Chr1:13021474 Lsi05g01354 Lsi-Chr5:21432590 4.68E-09 dispersed
Lsi02g02135 Lsi-Chr2:27673991 Lsi05g01354 Lsi-Chr5:21432590 0 dispersed
Lsi02g02136 Lsi-Chr2:27679349 Lsi05g01354 Lsi-Chr5:21432590 1.41E-26 dispersed
Lsi03g00368 Lsi-Chr3:4317707 Lsi05g01354 Lsi-Chr5:21432590 1.53E-12 dispersed
Lsi03g00720 Lsi-Chr3:9622045 Lsi05g01354 Lsi-Chr5:21432590 2.25E-08 dispersed
Lsi03g01202 Lsi-Chr3:22487203 Lsi05g01354 Lsi-Chr5:21432590 1.65E-08 dispersed
Lsi05g00529 Lsi-Chr5:6616638 Lsi05g01354 Lsi-Chr5:21432590 2.77E-08 dispersed
Lsi05g01308 Lsi-Chr5:20822804 Lsi05g01354 Lsi-Chr5:21432590 9.35E-09 dispersed
Lsi05g01354 Lsi-Chr5:21432590 Lsi09g01521 Lsi-Chr9:23315450 3.08E-16 dispersed
Lsi07g00351 Lsi-Chr7:3753124 Lsi05g01354 Lsi-Chr5:21432590 2.26E-15 dispersed
Lsi09g01897 Lsi-Chr9:27799365 Lsi05g01354 Lsi-Chr5:21432590 2.60E-15 dispersed
Lsi10g00957 Lsi-Chr10:13937361 Lsi05g01354 Lsi-Chr5:21432590 1.33E-11 dispersed
Lsi05g01354 Lsi-Chr5:21432590 Lsi11g01135 Lsi-Chr11:19823003 1.33E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01354 K10400 - csv:101216258 2139.38