Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01372 ATGGCTTCAGCCGCTGCTCCTTTATCGTTCCTCGGCACTTCCTTTCTAAGCGTCTCTTACTCACACAACCTTCGCAACCGTCCTCACCTTCATTTTCCGGCAACCACTTCAAGTTCCGGCCGACACTCTCTTGTTGTTGAAGCCAAGGCTACGACTAGACGAGAGGACCGTGCAGCTCGCCATTCTCGCATCAGGAAGAAGTCTTCTCGGCATCAAATGACAGTCATCAAAGCTGTAATCGGAACTCCTTTCGAGATAGGATCTGCTAAGATTTACATTTCAGTTCTTTGGGCCTCTGATGACTTGAAAAAATGGGATAGGGTAGCATTATGCAAAGAGCGACAGGGAACGACAGAGAGGCCAAGGTTGTCTGTGTTCCGTTCGAACAAGCATTTGTATGTACAGGTTATCGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCCACAATGCAGAAATCAATCTCTGAGGGGTTAGACTACAGTGCTGGCCCTACCATTGAAGTGGCAAAGAAAGTGGGAGAAGCGATTGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCATTCGACCGTGGTGGATATCCATACCATGGTCGTGTAGAAGCACTTGCCGATGCGGCTCGTGAACATGGCCTTCAATTCTGA 651 47.77 MASAAAPLSFLGTSFLSVSYSHNLRNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAARHSRIRKKSSRHQMTVIKAVIGTPFEIGSAKIYISVLWASDDLKKWDRVALCKERQGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21588602 21592642 - Lsi05G013720.1 Lsi05g01372 663864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01372 216 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 36 216 IPR005484 GO:0003735|GO:0005840|GO:0006412
Lsi05g01372 216 Hamap 50S ribosomal protein L18 [rplR]. 52 216 IPR004389 GO:0003735|GO:0005840|GO:0006412
Lsi05g01372 216 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 36 216 - -
Lsi05g01372 216 TIGRFAM L18_bact: ribosomal protein uL18 113 216 IPR004389 GO:0003735|GO:0005840|GO:0006412
Lsi05g01372 216 MobiDBLite consensus disorder prediction 31 45 - -
Lsi05g01372 216 Gene3D - 114 216 - -
Lsi05g01372 216 CDD Ribosomal_L18_L5e 112 214 - -
Lsi05g01372 216 SUPERFAMILY Translational machinery components 117 214 - -
Lsi05g01372 216 MobiDBLite consensus disorder prediction 31 68 - -
Lsi05g01372 216 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 112 216 IPR005484 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01372 K02881 RP-L18, MRPL18, rplR; large subunit ribosomal protein L18 - csv:101207433 284.263
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00416 Lsi-Chr4:4030471 Lsi05g01372 Lsi-Chr5:21588602 3.24E-15 dispersed
Lsi04g00419 Lsi-Chr4:4041172 Lsi05g01372 Lsi-Chr5:21588602 3.24E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g289 . Blo12g00370 Bda03g00839 . Bpe04g00794 . Bma04g00737 . . . . Cma14g01546 Car06g01357 Car14g01364 Sed02g1091 Cpe08g00124 Cpe03g01292 Bhi01g01152 Tan10g1143 Cmetu06g2510 . Hepe05g1329 . Lcy11g1289 . . . . . . . Cone14ag0672 Cone15ag0682 . . Lsi05g01372 . . Cme06g00847 . . . . . . . . . Cmo06g01591 Cmo14g01582 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008399 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01372 Lsi_Chr05 FPKM 6.425716 7.182761 8.993498 11.625565 1.163411 0.831471 0.982284 2.288673 3.117709 2.762464