Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01373 ATGGCCAGAGCTCCCATCCACACTCCGGCCAACTTGCTGACCTCTCGAAGCCTCGAATCCTGCTACTTAGGACGCCATGGCTGCCTCCGCTCGCCATTTCTGAGCCAGTCGCTACGCCCAGTTCCCGCAAACAAGTTAGTGATTGTTGGTGGTTGTGTAGTCGCCGGTTACGCTCGAAAATCGGTGGATTCTGCTGGAGTTTACCAGATCACTGACGATGAGGACTTTACCGTTACTTCCTCGGAGGAATTGCGTTACGATGGAGATGAGACAGTTGATGATGAAGGTACTAAGACTTCAGGAACACGTAGAAGGATTTCTATTGGAAGCTTTGCAAGATTGAAAACTCAGAAAGTTAAGGCAATTGTGACGAAAGGTTCTGGGACAAAGGAAGAATTAAGAGATGATGTCCGTGTACCAACTCCTGGAAATGGATCACCTCATATATCTGATCATCCACACTCTAAAGTTAAAACTATGGGAGAAAAGAAGAGGGTAAATGCCTTAAGAAATGTAGAAAAATTTTCAAGACCATCTGAACTACAAGATAGAGAAAGACATCACAGAACTGCCCCCAATTTATCAAGATCCGAGCCATTAGTTCCAGCAGGTTCTGCTGCTTACTTCCGAGGATGGGGCTCTAGAGGGCCTTATGGTTCTGAATATGAACTAACCGAGTCTAAACAACAGAAATTTTCCTCAGAGAAGGGCTTTTATAGCCGAAAGTCATTTAAAGATCTTGGGTGCTCTGAATATATGATTGAATCATTGAGGAGGCAGAATTTTGTGCGGTCTTCACATATTCAGGCCAAGGCATTTGCATCAGTTATTGAAGGAAAGAGTTGTATAATTTCTGATCAAAGTGGATCTGGTAAGACATTAGCCTATCTTGCACCACTAATCCAGCGTCTGAGACAGGATGAACTTGAAGGACACCGAAAATCTTCTTCACAAAGTCCCCAAATTGTTATCATTGTGCCGACTGCAGAATTGGCTTCTCAGGTCTTAAGTAATTGCCGATCCATTTCAAAATTTGGGGTGCCATTTAGGTCTATGGTCGTGACAGGTGGTTTCCGGCAGAAAACTCAACTTGATAATCTACAAGAAGGTGTTGATGTTCTAATAGCAACTCCTGGTCGTTTGATGCTTCTATTAAACGAAGGCTTCTTGCTGTTATCAAATCTAAGATGTGCTGTAATGGACGAGGTAGATATCCTTTTTAATGATGAGGATTTTGAAGTTGCATTGCGGTCATTGATGAAATCTGCACCTGTTAACACACAATATCTATTTGTGACTGCAACTTTACCAGTTGACATATATAATACATTAGTAGAAAATTTTCCTGATTGTGAAGTGATCATGGGACCTGGAGTTCACCGGATAAGTCCTAGCCTGGAAGAGGTTCTTGTAGATTGTAGTGGTCAAGATGAGCAGAACAAGACACCGGATGCTGCTTTCTTGAATAAGAAAGATGCCCTCTTGCAGATTGCTGAAGGAACTCCAGTCTCGAAAACTATTGTTTTCTGTAACAAGATTGAGACATGTAGAAGAGTTGAAAATGCATTGCAGCGTTTTGATAAGAAAGGTAGCCACTTGCAAGTTTTTCCATTTCATGCTGCCCTAGCAAGAGAGTCACGGCTTGCAAATATGGAGGCCTTCACCAATTCTCATTCTAACCAAGTATCCAAGTTCTTGGTTTGCACTGATAGAGCATCACGTGGAATTGATTTTCCAAATGTGGATCACGTCATACTCTTTGACTTCCCCCGTGATCCTAGCGAGTATGTTCGCCGTGTTGGAAGAACTGCCAGAGGTGCTACAGGAAAAGGAAAAGCATTCATCTTCGTGGTCGGAAAGCAGGTGTCCCTCGCAAGGAGGATAATTGAAAGAAACAGGAAAGGCCACCCATTGCATGATGTGCCATCTGCTTATGAGCTTACATACTAA 1950 42.97 MARAPIHTPANLLTSRSLESCYLGRHGCLRSPFLSQSLRPVPANKLVIVGGCVVAGYARKSVDSAGVYQITDDEDFTVTSSEELRYDGDETVDDEGTKTSGTRRRISIGSFARLKTQKVKAIVTKGSGTKEELRDDVRVPTPGNGSPHISDHPHSKVKTMGEKKRVNALRNVEKFSRPSELQDRERHHRTAPNLSRSEPLVPAGSAAYFRGWGSRGPYGSEYELTESKQQKFSSEKGFYSRKSFKDLGCSEYMIESLRRQNFVRSSHIQAKAFASVIEGKSCIISDQSGSGKTLAYLAPLIQRLRQDELEGHRKSSSQSPQIVIIVPTAELASQVLSNCRSISKFGVPFRSMVVTGGFRQKTQLDNLQEGVDVLIATPGRLMLLLNEGFLLLSNLRCAVMDEVDILFNDEDFEVALRSLMKSAPVNTQYLFVTATLPVDIYNTLVENFPDCEVIMGPGVHRISPSLEEVLVDCSGQDEQNKTPDAAFLNKKDALLQIAEGTPVSKTIVFCNKIETCRRVENALQRFDKKGSHLQVFPFHAALARESRLANMEAFTNSHSNQVSKFLVCTDRASRGIDFPNVDHVILFDFPRDPSEYVRRVGRTARGATGKGKAFIFVVGKQVSLARRIIERNRKGHPLHDVPSAYELTY 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21594476 21603645 + Lsi05G013740.1 Lsi05g01373 663865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01373 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 618 IPR027417 -
Lsi05g01373 649 Gene3D - 464 640 IPR027417 -
Lsi05g01373 649 SMART helicmild6 517 607 IPR001650 -
Lsi05g01373 649 MobiDBLite consensus disorder prediction 128 161 - -
Lsi05g01373 649 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 273 454 IPR014001 -
Lsi05g01373 649 CDD SF2_C_DEAD 489 617 - -
Lsi05g01373 649 Gene3D - 217 454 IPR027417 -
Lsi05g01373 649 CDD DEADc 253 454 - -
Lsi05g01373 649 Pfam Helicase conserved C-terminal domain 491 606 IPR001650 -
Lsi05g01373 649 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 96 647 - -
Lsi05g01373 649 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 242 270 IPR014014 GO:0003724
Lsi05g01373 649 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 489 649 IPR001650 -
Lsi05g01373 649 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 96 647 - -
Lsi05g01373 649 SMART ultradead3 261 469 IPR014001 -
Lsi05g01373 649 Pfam DEAD/DEAH box helicase 267 440 IPR011545 GO:0003676|GO:0005524
Lsi05g01373 649 MobiDBLite consensus disorder prediction 177 193 - -
Lsi05g01373 649 MobiDBLite consensus disorder prediction 177 198 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01373 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - csv:101214337 1154.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00511 Lsi-Chr4:4755378 Lsi05g01373 Lsi-Chr5:21594476 3.91E-07 dispersed
Lsi05g01373 Lsi-Chr5:21594476 Lsi02g00248 Lsi-Chr2:2104891 1.26E-37 dispersed
Lsi05g01373 Lsi-Chr5:21594476 Lsi02g01962 Lsi-Chr2:25495214 4.15E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g288 . . . . . Bpe14g01079 . . . . . Cma14g01547 . Car14g01365 Sed02g1093 . Cpe03g01293 Bhi01g01151 Tan10g1142 Cmetu06g0925 . Hepe05g1330 . Lcy11g1291 . . . . . . . . . . . Lsi05g01373 . . Cme06g00846 Blo02g00460 . . Bda13g00235 . . . . . . Cmo14g01583 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011458 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01373 Lsi_Chr05 FPKM 160.626007 169.547882 215.576172 207.751511 121.004662 113.387215 100.698975 203.346771 211.713715 199.098495