Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01375 ATGGATCATCAAAATCCGAATAATGATCCGGCGCCGCTTCCGTCGCCGTCATCCACGACGGCGATTCTGGACGCTCCGCTTAACGCCGTCGGGTTTGAGATCGAAACCTTATCTCCTCACAGAGTAACCGGCCGCATTGTGGTTTCCCCAAAGTGCTGCCAGGCGTTTAAGGTGCTGCACGGCGGCGTATCGGCGATGATAGCGGAGGCTCTGGCGAGCGCCGGAGCACAGATGGCGTCGGGATTCAAAAGAGTGGCTGGATTTCATCTCAGTATTGATCATTTGCAGAGCGCCAAAATCGGTGACCTTGTTCTTGCCGAAGCTACCCCTCTTTCCATCGGCAATGCTATTCAGTTCTCCAACTACATCACAACCAACATGCCGTCTACCAATCATTCTCCGCCGTCGAAGTCGCCAGTTCTCGACGCTACGCTTCAGGCATTTGGATTTGAGGTCGACCATGTCTCTTCTCAAAAAGTTACCGGTCGTCTCCTCGTTTCTCCAATCTGCTGCCAGCCGTTCAAAGTGTTGCACGGCGGAGTATCGGCGTTGATCGCAGAGTCTTTGGCGAGTATGGGCGCGCATACGGCCTCCGGCTACCAGAGAGTCGCTGGAATTCATCTCAGTATCAACCACTTGAAAAGCGCCGCCCTCGGCGACTTTGTTCATGCCGAAGCCGCTCCGCATTATCCATTTATTCCCCCTCAACTCTCTTTCACTCAATACCAACCTCTCATTCTCCACTCCGGCCATCCGATACCGATTCGCAACCAAATGTCTGAAAAGAGTCTCCCTCCTCCGCCGTCTCAGCCCGCGGATCCGGATGCTCCGCTTAAGGCAGTCGGATTCAAGCTGGAACACGAATCTGCTCAGAGAGTGAGCGGCCGCATCCTCGTTTCCCCAATCTGCTGCCAGCCGTTTAATGTGTTGCACGGAGGAGTATCGGCGTTGATTGCGGAGGCTTTGGCGAGTAAGGGGGCTTATGTAGCGTCGGGTTACGGGAAAATTGTCGGAATCCAACTCAGTATCAATCACTTGAAGAGTGCTGAGATGGGCGCCGTCGTTCTCGCCGAAGCTACTCCGGTCACCGTCGGCAGAACCATTCAGGTATGGAATGTGGAATTGTGGAAGGATTTGAAAGAAAGGAAAATAGTTGTGTCTACGGTGACTCTTCTATGCAATTCCTCTGTCCAAAAAGACCCAAATGCCTAA 1212 53.22 MDHQNPNNDPAPLPSPSSTTAILDAPLNAVGFEIETLSPHRVTGRIVVSPKCCQAFKVLHGGVSAMIAEALASAGAQMASGFKRVAGFHLSIDHLQSAKIGDLVLAEATPLSIGNAIQFSNYITTNMPSTNHSPPSKSPVLDATLQAFGFEVDHVSSQKVTGRLLVSPICCQPFKVLHGGVSALIAESLASMGAHTASGYQRVAGIHLSINHLKSAALGDFVHAEAAPHYPFIPPQLSFTQYQPLILHSGHPIPIRNQMSEKSLPPPPSQPADPDAPLKAVGFKLEHESAQRVSGRILVSPICCQPFNVLHGGVSALIAEALASKGAYVASGYGKIVGIQLSINHLKSAEMGAVVLAEATPVTVGRTIQVWNVELWKDLKERKIVVSTVTLLCNSSVQKDPNA 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21639263 21655645 + Lsi05G013750.1 Lsi05g01375 663867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01375 403 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 145 228 IPR029069 -
Lsi05g01375 403 Gene3D Hotdog Thioesterase 268 394 - -
Lsi05g01375 403 Gene3D Hotdog Thioesterase 13 131 - -
Lsi05g01375 403 Gene3D Hotdog Thioesterase 132 230 - -
Lsi05g01375 403 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 276 391 IPR029069 -
Lsi05g01375 403 CDD PaaI_thioesterase 149 226 - -
Lsi05g01375 403 TIGRFAM unchar_dom_1: uncharacterized domain 1 279 391 IPR003736 -
Lsi05g01375 403 TIGRFAM unchar_dom_1: uncharacterized domain 1 145 228 IPR003736 -
Lsi05g01375 403 TIGRFAM unchar_dom_1: uncharacterized domain 1 28 118 IPR003736 -
Lsi05g01375 403 CDD PaaI_thioesterase 282 390 - -
Lsi05g01375 403 CDD PaaI_thioesterase 31 119 - -
Lsi05g01375 403 PANTHER 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 15 120 - -
Lsi05g01375 403 PANTHER 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 127 228 - -
Lsi05g01375 403 PANTHER 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 261 399 - -
Lsi05g01375 403 Pfam Thioesterase superfamily 175 227 IPR006683 -
Lsi05g01375 403 Pfam Thioesterase superfamily 57 119 IPR006683 -
Lsi05g01375 403 Pfam Thioesterase superfamily 307 378 IPR006683 -
Lsi05g01375 403 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 23 123 IPR029069 -
Lsi05g01375 403 PANTHER 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 15 120 - -
Lsi05g01375 403 PANTHER 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 127 228 - -
Lsi05g01375 403 PANTHER 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE 1 261 399 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01375 K19222 menI, DHNAT; 1,4-dihydroxy-2-naphthoyl-CoA hydrolase [EC:3.1.2.28] - csv:101207188 191.045
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g274 . . . . . Bpe14g01074 . . . . . Cma14g01549 . Car14g01367 . . Cpe03g01296 . . . . . . . . . . . . . . . . . . Lsi05g01375 . . Cme06g00843 . . . . . Bpe13g00717 Bma02g00958 . . . Cmo14g01585 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001398 2 3 2 3 2 3 2 3 3 1 3 3 2 2 1 2 3 1 3 3 2 3 3 2 3 1 2 5 5 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01375 Lsi_Chr05 FPKM 0.587319 0.0 1.326064 0.961387 44.815655 36.330116 39.354832 0.0 0.0 0.0