Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01381 ATGAGAGTTGGGAAGTATGAGTTGGGGAAAACTCTTGGAGAAGGCAATTTCGGCAAGGTGAAGTTGGCCGCCGACATCCGTACTGGCCGTCGTTATGCCGTCAAGATCCTCGACAAGACCAAGATTCTCCATCTCAACTTCTCCGATCAGATTAAGCGTGAAATAAGTACTCTCAAGCTTCTCAGGCATCCGAATGTTGTAAGACTTTATGAGGTTTGTATTCGAATGAACGTTTTAGCTAGTAAGACGAAGATTTATATGGTTCTGGAGTGCGCCTCCGGTGGAGAATTGTTTGATAGAATTGAATCGAAAGGTAAGATGGATGAAGTTGAAGGTCGGAGGCTCTTCCAGCAGATTATTGATGGTCTTAGCTACTGCCATGACAAAGGAGTTTACCACAGGGATCTCAAGGTATTTACATGCAGTTTCTGTCTCATTTCGTTGAACAATCCACTCTTCGTAGCGTTTTTATTTGATATTTCTTGCCGGTTGATCCGTTTGGAAAACGTGCTTGTTGATGCTAAGGGAAATATTAAGATTTCTGATTTTGGCCTCAGTGCTTTACCACAGAATTGCAGGGAAGATGGTTTGCTGCACACCACCTGTGGAAGTCCCAACTATGTTGCGCCAGAGGTTCTTGCTAATAGAGGATACAATGGAGCCGCCTCTGATATATGGTCATGTGGAGTTATCTTGTATGTTATTCTTACGGCTTGTCTTCCTTTCGACGAGACCAATCTGGCTTTACTTTATAAAAAGACTTTGAGGGGGGATTTTCAGATACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATAAGGAGAACTCTTGACCCCAATCCCAATACTCGGATTACCATGGCAGGAATTAAAGAGAATGAGTGGTTCAAGACTGACTACAATCCTGCTTCTCCTTGTTATGATGATGATGAGGAGGAGGGTTCACTTACTGATCAGGATGATGCCATCTCAACGCCTGATGAGCCATCTGACGTTGAAAACAGCCCAGAATCGCCTTCTATGATCAATGCGTTTGAGTTAATTGGGATGTCTTCAAGTTTAGATTTGTCTGGCTTCTTTGAGCAAGAGGATGTCTCTGAGAGGAAGATCAGATTTACATCTAACCATTCTGCCAAAGACTTGCTCGAGAGAATCGAGGTTATCGCAACGGATATGGGATTTCGAGTTCAAAAGAAAAGTGGAAAGGTTGGTACTCAATTCTTAGCATTGAAAGAATCTGGTAGATGTCATTATCATTAA 1260 42.7 MRVGKYELGKTLGEGNFGKVKLAADIRTGRRYAVKILDKTKILHLNFSDQIKREISTLKLLRHPNVVRLYEVCIRMNVLASKTKIYMVLECASGGELFDRIESKGKMDEVEGRRLFQQIIDGLSYCHDKGVYHRDLKVFTCSFCLISLNNPLFVAFLFDISCRLIRLENVLVDAKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYNGAASDIWSCGVILYVILTACLPFDETNLALLYKKTLRGDFQIPKWLSAGARNLIRRTLDPNPNTRITMAGIKENEWFKTDYNPASPCYDDDEEEGSLTDQDDAISTPDEPSDVENSPESPSMINAFELIGMSSSLDLSGFFEQEDVSERKIRFTSNHSAKDLLERIEVIATDMGFRVQKKSGKVGTQFLALKESGRCHYH 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21702250 21704360 - Lsi05G013810.1 Lsi05g01381 663873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01381 419 PANTHER CBL-INTERACTING PROTEIN KINASE 21 163 403 - -
Lsi05g01381 419 PANTHER CBL-INTERACTING PROTEIN KINASE 21 1 137 - -
Lsi05g01381 419 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Lsi05g01381 419 SUPERFAMILY Protein kinase-like (PK-like) 3 310 IPR011009 -
Lsi05g01381 419 MobiDBLite consensus disorder prediction 319 339 - -
Lsi05g01381 419 MobiDBLite consensus disorder prediction 301 339 - -
Lsi05g01381 419 Gene3D Kinase associated domain 1, KA1 343 415 - -
Lsi05g01381 419 ProSiteProfiles NAF domain profile. 337 361 IPR018451 GO:0007165
Lsi05g01381 419 Gene3D Transferase(Phosphotransferase) domain 1 2 342 - -
Lsi05g01381 419 ProSiteProfiles Protein kinase domain profile. 6 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01381 419 PANTHER - 163 403 - -
Lsi05g01381 419 PANTHER - 1 137 - -
Lsi05g01381 419 Pfam NAF domain 339 398 IPR004041 GO:0007165
Lsi05g01381 419 Pfam Protein kinase domain 165 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01381 419 Pfam Protein kinase domain 6 137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01381 419 CDD CIPK_C 343 403 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01381 Lsi-Chr5:21702250 Lsi01g01604 Lsi-Chr1:14328759 2.41E-114 dispersed
Lsi05g01381 Lsi-Chr5:21702250 Lsi01g00124 Lsi-Chr1:1284522 2.61E-131 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83662 PF00069 Pkinase 6.10E-28 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01381 K07198 - csv:101205987 691.804