Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01384 ATGTCGGCTTTGTCCAGAGGTCTCCTTTCTCGTTTTCGTCTTCTCTCGATCAATTCCGGCGCTTCTCATACAATTACTTCTTCTTCTTCTTCAAGGACAAATACGTCTTGTTACTACTTCTTCCGTGCTTTCAGTACCCAGGATTTAATCCAGGCCAACGATGGGTCTTTGCCATCTTCATCGATCATTGAAGCTAAACCTGGTGTTATGGCCGCGAGCTCGAATCGGACGGGTGTTATTGCCGTCAAGTGTGGAATGTCGGCGCTGTGGGATAAATGGGGAGCTAGGGTACCCATCACTGTGCTCTGGGTTGATGATAATATTGTGTCTCAGGTCAAGACCATTGAGAAAGAAGGTATCACAGCTCTCCAGAAGAAGGCAAAGCATTTGACAAAACCTGAGTTAGGTCATTTTAGGGCTCAAGGTGTTCCATTGAAGAGGAAACTGAAGGAGTTCCCAGTGACAGAAGATGCACTTCTTCCAGTTGGTACAGCAATTGGCGTTCGTCATTTTGTTCCCGGACAGTATGTTGATGTGACAGGAATAACTAGAGGGAAAGGTTTTCAGGGAGTGATGAAAAGGCATGGTTTTTCAGGAATGCCGGCAACCCATGGAGCATCACGATCCCATAGAACTGCTGGTTCTACGGGTCAGAGGGATGCTCCTGGAAAGGTCTTCAAAGGTAGAAAGATGGCTGGGCGTATGGGTGGGAAGCAGAGAACTGTGAAAAATGTGTGGATATACAAAATTGATCCTGCAAGAAACTTGATATGGGTGAGAGGACAAGTCCCTGGCGCCGAAGGAAACTTTGTATTTCTAAAAGACGCCGGCTACAAGAAACTGAATAAGTCATCAATCCTTCCGTTTCCTACGTACTTCGCAGCCGATGACGAGGACACGGAGAAGTTGGAACCTCTTGTTGCTGATCTTGGTGAAGTAGATCCATTTATGATTGGAGATTGA 963 46.31 MSALSRGLLSRFRLLSINSGASHTITSSSSSRTNTSCYYFFRAFSTQDLIQANDGSLPSSSIIEAKPGVMAASSNRTGVIAVKCGMSALWDKWGARVPITVLWVDDNIVSQVKTIEKEGITALQKKAKHLTKPELGHFRAQGVPLKRKLKEFPVTEDALLPVGTAIGVRHFVPGQYVDVTGITRGKGFQGVMKRHGFSGMPATHGASRSHRTAGSTGQRDAPGKVFKGRKMAGRMGGKQRTVKNVWIYKIDPARNLIWVRGQVPGAEGNFVFLKDAGYKKLNKSSILPFPTYFAADDEDTEKLEPLVADLGEVDPFMIGD 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21728938 21750489 + Lsi05G013850.1 Lsi05g01384 663876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01384 320 Hamap 50S ribosomal protein L3 [rplC]. 76 277 IPR019927 GO:0003735|GO:0005840|GO:0006412
Lsi05g01384 320 ProSitePatterns Ribosomal protein L3 signature. 171 194 IPR019926 -
Lsi05g01384 320 Pfam Ribosomal protein L3 150 251 IPR000597 GO:0003735|GO:0005840|GO:0006412
Lsi05g01384 320 MobiDBLite consensus disorder prediction 201 224 - -
Lsi05g01384 320 PANTHER BNAA01G27990D PROTEIN 1 319 - -
Lsi05g01384 320 PANTHER 50S RIBOSOMAL PROTEIN L3 1 319 IPR019927 GO:0003735|GO:0005840|GO:0006412
Lsi05g01384 320 SUPERFAMILY Translation proteins 73 297 IPR009000 -
Lsi05g01384 320 Gene3D Translation factors 198 280 - -
Lsi05g01384 320 Gene3D - 108 166 - -
Lsi05g01384 320 TIGRFAM L3_bact: 50S ribosomal protein uL3 78 274 IPR019927 GO:0003735|GO:0005840|GO:0006412
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01384 K02906 RP-L3, MRPL3, rplC; large subunit ribosomal protein L3 - csv:101205048 539.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01384 Lsi-Chr5:21728938 Lsi09g01886 Lsi-Chr9:27661113 3.00E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g260 . Blo12g00372 Bda03g00838 . Bpe04g00793 . Bma04g00736 . . . . . Car06g01348 . Sed02g1104 Cpe08g00132 . Bhi01g01131 Tan10g1125 Cmetu06g1995 . Hepe05g1343 . Lcy11g1303 . . . . . . . Cone14ag0677 Cone15ag0688 . . Lsi05g01384 . . Cme06g00832 . . . . . . . . . Cmo06g01582 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011772 1 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 3 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01384 Lsi_Chr05 FPKM 73.870667 82.427032 108.991837 100.148849 115.309845 109.218361 114.228989 0.0 0.0 0.0