Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01387 CGCCTTTTTATTGATCAACCAGCTACTGTAATCAAATTGTATCCGGAGTTCACTGGTGATGCCCATTATACTTGGGCTCAGTTAGACCCCAGTATTGTAGCAATGATGGCCCCTATTCGCTCCTCTGGATTTGTTGATCCAGGGTGGGAGCATGGAGTTGCTCAAGATGAAAAGAAGAAGAAGGTTAAATGTAATTACTGCGGGAAAATAGTAAGTGGTGGCATATATAGATTGAAGCAACATTTAGCTCGAGTTTCAGGGGAAGTTACTTATTGTGACAAGGCTCCGGAGGAAGTATATTTGAGAATGAGAGAAAACCTGGAAGGTTGTCGTTCCAATAAGAAACCAAGGCAATCTGAAGATGATGAACAATCGTATTTGAACTTCCATTCCAATGATGATGAAGAAGATGGTTTACATGTGGCTTATAGAAACAGAGGAAGGCAACTGATGGGAAACAGGAATGTTGGTGCTAACATGACTCCTCTAAGGTCATTAAGATATGTTGATCCTGGATGGGAACATGGTGTGGCTCAAGATGAAAGGAAGAAGAAGGTAAAGTGCAACTACTGTGCAAAGACAGTCAGTGGAGGTATTAACAGGTTTAAACAACATTTAGCCAGAATTCCTGGAGAGGTAGCTCCTTGTAAACATGCTCCTGAGGAAGTGTATCTTAAGATCAAAGAGAATATGAAATGGCATCGTACTGGTAGGAGACATGTACAGACTGATGCCAATGAGATATCGGCTTATTTTATGCAATCAGACAATGAAGAAGAAGAAGATGAGAAAGAGGAATCCATGCATCATATTAGCAAGGAAAGGTTTATGGATGGTGACAAAAGATCGAGCAAAGATTTGAGAAGTACTTTCAGGGGAATGTCCCCCAGTGGTGGATCTGAACCGTCAGTTAAAAGATCAAGGTTAGATTCTGTTTTTCTGAAAACCACCAAAAGACAAACTGAACAGGTGCACAAACAAGCTTTAGTAAAAAGAGGAGGCAGTAGGAGGTCACGGAAAGAAGTGATGTCTGCAATTTGCAAATTCTTTTGCTATGCAGGAATTCCATTTCAATCTGCAAATTCTGTTTACTTTCATAAGATGTTGGAGACAGTTGGTCAATATGGGTCAGGCTTGGTTGGCCCTTCGTGTCAATTGATATCTGGTCGGTTATTACAGGAGGAAGTTGCAACCATTAAGTCTTACCTGGTTGAGTTGAAGGCCTCCTGGGCAGTTACTGGTTGTTCTATTCTGGTAGACAATTGGAAGGATTCAGATGGTAGGACGTTTATAAACTTTTTGGTTTCTTGTCCCCGTGGTGTTTACTTTGTCTCATCAGTCGATGCCACGGAAATAGTAGACGACCCTTCAAACTTGTTTAGAGTTCTTGATGAAGTGGTAGATGAAATTGGAGAAGAAAATGTGGTGCAGTTAATCACTGAGAATACTCCCAATTATAAAGCTGCTGGGAAAATGCTTGAGGAGAAGAGAAGAAATTTATTCTGGACTCCATGTGCGACCTATTGTATTGATCACATGCTTGAAGATTTTTTGAAATTGAGATCCGTGGAAGACTGCATGGAAAAGTGCCAAAAAATTACCAAATTTATTTACAATCGGAGCTGGTTGTTAAATTTCATGAAGAACGAATTCACCCAGGGGTTGGAACTTCTGAGACCTGCAGTTACTCGGAATGCCTCAAGCTTTACTACTTTGCAGTGCTTGCTGGACCACAGAGCTAGTTTACGGAGAATGTTTGTCTCCAACGAGTGGACTTCTAGCAGGTTTTCCAAATCTGGTGAGGGACAAGAAGTAGAGATATTTGTATTAAATCCTTCATTTTGGAAGAAGGTGCAGTATGTTTGTAAATCTGTGGAACCAGTATTGCAAGTTCTTCAAAAAGTCGATTCTGTTCAAAGCTTGTCAATTTCATCAATATATAGTGATATGTACAGAGCCAAGTTTGCTATACAATCCATTCATGGTGATGATGCCAGGAAATATGGACCATTCTGGAATGTGATAGATAGCAACTGGAATTCTTTATTTTGCCACCCTTTACATATGGCTGCTTTTTTCTTAAACCCATCATACAGATATCGTCCCGATTTTGTGGCGCATTCGGAGGTGGTTCGTGGACTTAATGAATGCATAGTTCGACTAGAGTCTGACAATTCCAGAAGGATTTCTGCATCTATGCAGATTTCTGACTATAATTCAGCAAAGTCTGATTTTGGAACTGAGCTGGCTATTAGTACAAGAACAGAACTTGATCCAGCTGCATGGTGGCAACAACATGGAATCAGTTGCTTAGAACTGCAACAAATAGCTGTTCGCATACTGAGTCAGACATGTTCATCTTTGTGTTGTGAACACAACTGGACCCCATTCACTAAGGAACACAGTCAAAGGCACAATACTTTGTCTCAGAGAAAAATGGCTGATTTGTTGTATGTTCACTACAACCTGCGACTTCGAGAACGCCAACTAAGAAAGCAATCTAATGAGTCTATTTCTCTTGATCATATTCTTATGGAACATTTATTGGATGATTGGATTGTGGAACCCCAGAAACAAGACATGCAAGAAGATGAGTTCTTGGATATATGTGGTTTGACAGATGCAAAGAAAAATCTGAGAAAGATTGTGAACCTTATCAAGAACGCCTCATCAGGAAAAGCCCTTGCCTTTAAAGACACGAGTGAGTCTCAAACAAGATATGGGAGAGGAATGATTGTTAGATTAGCTAGTTTAGCAGCAAGTCGTCATTACTTCATAAGGACTGTCTCAGAAATCCTTTGTCCTGGATTGGAGCCGCTTGATGCATATGAGAATGATTTGATTGACTATGAGGATGGGACTTCAGAGGGCCGGAAGGGTTGCCTTCAACTGGTTGGTTTGACTGATGTAGACACATTGGATGTCAATCCTGCCAACGGAGGCGGTTCCATAGACAACGATGCCGATGTTAAGTTCTATGACAATGACAATGAGCTAAGTGACTAA 3006 40.72 RLFIDQPATVIKLYPEFTGDAHYTWAQLDPSIVAMMAPIRSSGFVDPGWEHGVAQDEKKKKVKCNYCGKIVSGGIYRLKQHLARVSGEVTYCDKAPEEVYLRMRENLEGCRSNKKPRQSEDDEQSYLNFHSNDDEEDGLHVAYRNRGRQLMGNRNVGANMTPLRSLRYVDPGWEHGVAQDERKKKVKCNYCAKTVSGGINRFKQHLARIPGEVAPCKHAPEEVYLKIKENMKWHRTGRRHVQTDANEISAYFMQSDNEEEEDEKEESMHHISKERFMDGDKRSSKDLRSTFRGMSPSGGSEPSVKRSRLDSVFLKTTKRQTEQVHKQALVKRGGSRRSRKEVMSAICKFFCYAGIPFQSANSVYFHKMLETVGQYGSGLVGPSCQLISGRLLQEEVATIKSYLVELKASWAVTGCSILVDNWKDSDGRTFINFLVSCPRGVYFVSSVDATEIVDDPSNLFRVLDEVVDEIGEENVVQLITENTPNYKAAGKMLEEKRRNLFWTPCATYCIDHMLEDFLKLRSVEDCMEKCQKITKFIYNRSWLLNFMKNEFTQGLELLRPAVTRNASSFTTLQCLLDHRASLRRMFVSNEWTSSRFSKSGEGQEVEIFVLNPSFWKKVQYVCKSVEPVLQVLQKVDSVQSLSISSIYSDMYRAKFAIQSIHGDDARKYGPFWNVIDSNWNSLFCHPLHMAAFFLNPSYRYRPDFVAHSEVVRGLNECIVRLESDNSRRISASMQISDYNSAKSDFGTELAISTRTELDPAAWWQQHGISCLELQQIAVRILSQTCSSLCCEHNWTPFTKEHSQRHNTLSQRKMADLLYVHYNLRLRERQLRKQSNESISLDHILMEHLLDDWIVEPQKQDMQEDEFLDICGLTDAKKNLRKIVNLIKNASSGKALAFKDTSESQTRYGRGMIVRLASLAASRHYFIRTVSEILCPGLEPLDAYENDLIDYEDGTSEGRKGCLQLVGLTDVDTLDVNPANGGGSIDNDADVKFYDNDNELSD 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21755829 21760147 + Lsi05G013870.1 Lsi05g01387 663879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01387 1001 Pfam Protein of unknown function (DUF 659) 382 533 IPR007021 -
Lsi05g01387 1001 PANTHER OSJNBA0013A04.12 PROTEIN 39 83 - -
Lsi05g01387 1001 PANTHER OSJNBA0013A04.12 PROTEIN 81 864 - -
Lsi05g01387 1001 MobiDBLite consensus disorder prediction 289 304 - -
Lsi05g01387 1001 SUPERFAMILY Ribonuclease H-like 409 826 IPR012337 -
Lsi05g01387 1001 MobiDBLite consensus disorder prediction 277 307 - -
Lsi05g01387 1001 ProSiteProfiles Zinc finger BED-type profile. 43 99 IPR003656 GO:0003677
Lsi05g01387 1001 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 39 83 - -
Lsi05g01387 1001 PANTHER HAT DIMERIZATION DOMAIN-CONTAINING PROTEIN 81 864 - -
Lsi05g01387 1001 MobiDBLite consensus disorder prediction 110 133 - -
Lsi05g01387 1001 Pfam BED zinc finger 49 84 IPR003656 GO:0003677
Lsi05g01387 1001 Pfam BED zinc finger 173 208 IPR003656 GO:0003677
Lsi05g01387 1001 Pfam hAT family C-terminal dimerisation region 753 823 IPR008906 GO:0046983
Lsi05g01387 1001 ProSiteProfiles Zinc finger BED-type profile. 167 223 IPR003656 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01387 - - - csv:101213851 1610.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01387 Lsi-Chr5:21755829 Lsi08g00613 Lsi-Chr8:14454861 5.83E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g258 Blo01g00023 . . . . . . Bma05g00985 . . . Cma14g01559 . Car14g01374 . . Cpe03g01303 Bhi01g01128 . . . Hepe05g1345 . Lcy11g1304 . . . . . . . . . . . Lsi05g01387 . . Cme06g00830 . . . . Bpe05g00794 . . . . . Cmo14g01593 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007263 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 4 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01387 Lsi_Chr05 FPKM 152.44136 167.613297 120.113846 114.660919 180.618759 259.606293 175.126266 92.643089 101.911972 86.522171