Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01392 ATGGCGACGGAGACTTGTACACAGGCCTACGGCGAGCCCTCGTATTGGGACAATCGCTATTCCAACGAATCTGGCCCCTTTGATTGGTACCAGAAGTATCACTCCTTGGCGCCATTGATCAATCTCTATGTCTCTCGCCATCATCGCATCCTCGCCGTCGGTTGCGGCAACTCAGCATTTAGCGAAGGAATGGTCGATGATGGCTACGAGGACGTGGTGAATGTCGATATATCGTCTGTTGTGATCGAAGCAATGCAGAAGAAGTATTGTAATCGTTCGCAGTTGACATATGTGAGAATGGATGTTCGTGATATGAGTGCATTTGAAACATGTTCTTTCGATGCCGTTCTTGACAAAGGTGTAGTATTCCCCATGTACACGGTTTATAATTCTCTCCGTGCACGGTTATCTGGTACCCTAGACTCTCTATTGGTGAGTGTTGAGTGTTTTGATAGGTTTATCTTTTCTACATTAATTGCTTATGTTACATATGGAGCTCCCACGTATAGACTAAGTCTACTGAAACGTACTTTCTCATTGATAAAGCTTCATGTCATAGAGAAATTTGTTTCAGAGAAAAAAACTGACCTTCCAAAGTGGGACCTCTTGAAACCTGTTCCATTTGACAACGACACGAGCCCGCTAGAAACCGTGCTCGGGCAGAATCCTGATGTCCACTATATATACATCTGTACGAAGGATAGTTCTTTGAAGCCAGACCAGAAGAATGTCGTTGCTGTTGAGTGA 747 44.44 MATETCTQAYGEPSYWDNRYSNESGPFDWYQKYHSLAPLINLYVSRHHRILAVGCGNSAFSEGMVDDGYEDVVNVDISSVVIEAMQKKYCNRSQLTYVRMDVRDMSAFETCSFDAVLDKGVVFPMYTVYNSLRARLSGTLDSLLVSVECFDRFIFSTLIAYVTYGAPTYRLSLLKRTFSLIKLHVIEKFVSEKKTDLPKWDLLKPVPFDNDTSPLETVLGQNPDVHYIYICTKDSSLKPDQKNVVAVE 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21792415 21796124 + Lsi05G013920.1 Lsi05g01392 663884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01392 248 Pfam Methyltransferase domain 51 123 IPR013216 GO:0008168
Lsi05g01392 248 CDD AdoMet_MTases 49 117 - -
Lsi05g01392 248 Gene3D Vaccinia Virus protein VP39 8 244 IPR029063 -
Lsi05g01392 248 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 5 233 - -
Lsi05g01392 248 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 5 233 - -
Lsi05g01392 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 9 125 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01392 - - - csv:101203026 374.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02539 Lsi-Chr2:31870074 Lsi05g01392 Lsi-Chr5:21792415 2.32E-39 dispersed
Lsi05g01392 Lsi-Chr5:21792415 Lsi11g01056 Lsi-Chr11:18319346 1.06E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g246 . . . . . . . . . . . Cma14g01563 . Car14g01380 Sed02g1116 . Cpe03g01308 Bhi01g01121 Tan10g1110 Cmetu06g2692 . Hepe05g1350 . Lcy11g1311 . . . . . . . . . . . Lsi05g01392 . . Cme06g00825 . . . . . . . . . . Cmo14g01599 . . Car08g01105 . Cpe12g00279 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007366 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01392 Lsi_Chr05 FPKM 4.325714 5.276943 10.790717 9.78132 41.634384 40.155987 43.138165 8.587088 8.26549 8.535669