Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01397 ATGGAGTTCATCTCCACTTTATTTCTAAGTTTTAACGTCCTCGCCTTCAATAATCTCCACCAGTTGGACAAGACAAAGTTTCATATAATTGGGGCAATTCTCTTTACGGCTCAGTCAGCCTTATTACATCCAACAGCGGTTGTAAAAACTAGAATGCAAGTTGCTGGATCTGGTCTATCTCACATGCGTGGACTGTCAGTTTTCTGGAATATATTGAAGTCTGATGGAATCTCTGGCTTGTATAGAGGTTTTGGTACTTCAGCGATTGGATCATTACCTGGTAGAGTATTGGCTTTAACATCACTAGAAGTATCAAAAGACATAATGCTGAAATATACTGGAAATCTGGAAATGCCTGAAGCAACACGTGTTGGTCTTGCTAATGGGGTGGCGGGCATGATCTCAAATTTAGTTTCATGCATATACTATGTGCCATTGGACGTGACTTGCCAGAGGCTGATGGTTCAAGGGCTTCCTGGAACCACCTACTGCAATGGCCCAGTTGATGTTGTCAGAAAAGTGATGAAGGCTGAAGGATTTCGTGGTTTATATAGGGGTTTTGGATTAACGGCTGTAACTCAGTCCCCAGCATCTGCTCTCTGGTGGGGTGTTTATGGTGCTGCTCAGCATATTATCTGGAGGAGCTTAGGATATCGAGATAGCATGGAGAAGAAACCTTCTCACATGGAGATGGTGACGGTTCAGGCCACAGCAGGAATGGTGGCAGGTGCTTGTTCCTCTGTTCTTACAACTCCCGTAGACACAGTAAAGACGCGACTTCAGGTCATCGATAACTATGGAATTGGAAGACCATCCGTGCTCAAGACTTCAAGAGCACTTCTCAAGGAAGATGGATGGTTGGGATTTTATAGAGGCTTTGGACCTCGGTTTTTGAATATGTCACTTTATGGAACCACGATGATAGTCACTTATGAACTGATCAGTAAGTCCGGATTTTACGTTCTTCTAATGTGTGAAGGTTTATGA 987 43.47 MEFISTLFLSFNVLAFNNLHQLDKTKFHIIGAILFTAQSALLHPTAVVKTRMQVAGSGLSHMRGLSVFWNILKSDGISGLYRGFGTSAIGSLPGRVLALTSLEVSKDIMLKYTGNLEMPEATRVGLANGVAGMISNLVSCIYYVPLDVTCQRLMVQGLPGTTYCNGPVDVVRKVMKAEGFRGLYRGFGLTAVTQSPASALWWGVYGAAQHIIWRSLGYRDSMEKKPSHMEMVTVQATAGMVAGACSSVLTTPVDTVKTRLQVIDNYGIGRPSVLKTSRALLKEDGWLGFYRGFGPRFLNMSLYGTTMIVTYELISKSGFYVLLMCEGL 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21810658 21812588 - Lsi05G013970.1 Lsi05g01397 663889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01397 328 PANTHER OS01G0329400 PROTEIN 18 316 - -
Lsi05g01397 328 SUPERFAMILY Mitochondrial carrier 22 313 IPR023395 -
Lsi05g01397 328 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 18 316 - -
Lsi05g01397 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 23 108 IPR018108 -
Lsi05g01397 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 211 IPR018108 -
Lsi05g01397 328 ProSiteProfiles Solute carrier (Solcar) repeat profile. 230 317 IPR018108 -
Lsi05g01397 328 Gene3D Mitochondrial carrier domain 118 318 IPR023395 -
Lsi05g01397 328 Pfam Mitochondrial carrier protein 127 213 IPR018108 -
Lsi05g01397 328 Pfam Mitochondrial carrier protein 29 112 IPR018108 -
Lsi05g01397 328 Pfam Mitochondrial carrier protein 234 316 IPR018108 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01397 K15121 SLC25A44; solute carrier family 25, member 44 - csv:101213375 575.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00181 Lsi-Chr3:2374026 Lsi05g01397 Lsi-Chr5:21810658 3.91E-102 dispersed
Lsi05g01397 Lsi-Chr5:21810658 Lsi10g01460 Lsi-Chr10:18705393 1.10E-27 dispersed
Lsi05g01397 Lsi-Chr5:21810658 Lsi02g02914 Lsi-Chr2:35350355 1.21E-68 transposed
Lsi05g01397 Lsi-Chr5:21810658 Lsi04g01400 Lsi-Chr4:21784232 8.02E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g230 . . . . . . . . . . . Cma14g01569 . Car14g01383 . . Cpe03g01311 Bhi01g01116 . . . . . . . . . . . . . . Cone15ag0699 . . Lsi05g01397 . . Cme06g00821 . . . . . . . . . . Cmo14g01603 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002174 2 4 1 1 1 2 3 2 2 2 2 1 4 2 2 3 2 3 3 1 2 2 2 2 2 2 2 2 3 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01397 Lsi_Chr05 FPKM 9.108346 9.144835 16.858978 13.245586 10.644606 10.842568 10.246194 21.016039 21.827938 23.222898