Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01398 ATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCGAATAATGTCATTAGGCTTTACCGCGAGTGCCTTCGAAGAGCCAAGTATATTGGCCATCAGGTATGGATGTGCAAAATGGAAAATCCTGTTCATTTCAGCCCATCCTTCAAACAACATAACACCGAGCTTCTTGTTACTATGGTGAGGCAACAATTCAGAAAAAACATGCGTGAGACTGATCCAGAGAAGATTCAGAAGTTGAAAGATGATGCTGCTAGGGGACTTATAAACCATATTCTATACGAATCTGAGAGAATGTCAGGTCGAAAATTCAGCCAAAGTTCTTGA 327 42.2 MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS 108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21820603 21823249 - Lsi05G013980.1 Lsi05g01398 663890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01398 108 Pfam Complex 1 protein (LYR family) 51 85 IPR008011 -
Lsi05g01398 108 CDD Complex1_LYR_SF 16 90 - -
Lsi05g01398 108 PANTHER COMPLEX 1 LYR PROTEIN 1 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01398 - - - qsu:112032794 159.844
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g224 . . . . . Bpe14g01081 . . . . . . . . Sed02g1120 . . Bhi01g01114 Tan10g1100 Cmetu06g1680 . Hepe05g1355 . . . . . . . . . . . . . Lsi05g01398 . . Cme06g00820 . . . . . . Bma02g00944 . . Cmo06g01574 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013226 1 2 1 1 1 0 0 0 0 1 1 0 1 1 1 1 0 1 0 0 1 2 1 1 1 1 1 3 2 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01398 Lsi_Chr05 FPKM 76.751205 77.309952 72.955559 69.490654 96.897537 106.304482 107.483192 83.140686 80.087601 71.729721