Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01400 ATGCGGGTTTTGCATTTGCTTAGAAGATATCTGGGGGAATATGTCCAAGGACTCTCATTAGAGGCTTTAAGAATAAGTGTCTGGAAAGGTGATGTTGTCCTTAAAGATTTGAAATTAAAGACTGAGGCACTCAATTCACTTAGGCTTCCCGTCACCGTCAAAGCTGGTTTTGTTGGTACTATAACATTAAAGTTTTTGGAGTTTGTTGAACCGTTCTTGTGCCCACCAGCTGGTCGCCATCCTATCTACCCAAACCCTAGTTCTCCTCCCATCCTTGGTCTTTTAGTGAAAAGTGTTACCCAGGCATTTTGTGTGTTGACATTGTATCCTTTTCCTCATCCTCGGTCGAGTCTCCTACTACAGCTACAAATGAAACAAATTTATCCTTTGGGAAAAAAGAATAAAGTAGACGACAAGGGCAAGAAGGTGGTGATGGTCAGCAACAGAAATTCCTATCATGTTCCTTGGAAAAGTTTAGGCAAGGAGCCAGTTATTGTTCTCATTGATCGAGTTTTTGTTCTTGCGCATCCTGCGCTTGATGGTCAGACTTTGAAGGAAGAGGATAGGGAAAAACTTTTTGAAGCTAAGCTTCAACAGATTGAGGAAGCAGAATCTGCAACTCTTGAAGCCATCTCAAGGTCAAAGCTAGGAAATCCATCTAGTGGAACTTCATGGCTTGGTTCTCTAATTTCAACGATAATTGGAAACCTTAAGATTTCAATTAGCAATGTCCATATCAGATATGAAGATTCTGTCAGCAACCCAGGATATCCATTCTGCACGGGTGTTACTTTAGCCAAACTTGCGGCAGTTACCATGGATGAGCAGGGGAATGAAACGTTTGATACAAGTGGCGCTCTTGATAAACTCCGCAAGTTAGTGCAACTTGATAGACTTGCCATGTATCATGATTCAAATACCTTGCCATGGAGTTTGGACAATAAATGGGAAGATCTTAGTCCGAAGGATTGGATTGAGGTATTTGAGGATGGTATAAATGAACCCACTGCTGACCATGGATTGGGGCATAAATGGGCTGTGAATCGAAATTACTTGGTTTCACCGATTAATGGAATTTTGAAATATCATCGTCTTGGAAATCTAGAAAGAAATGATCCTGAGATTCCATATGAAAAAGCTTCCTTAGTTTTGGGCGACGTGTCTTTGACAATGACGGAGCTATATGCTGGTTCATTGCAACGATTGTCAAATACTAGTACCACTGAGATTAGAGAAATCGAGAAGGATCTCGACTCCAAAGTGATTCTTTTATGGAGGCGTACGAACTCTGAAGACACTTCTGATGGGGATGCTTCGGAGGGATCGCATTTAGGTGTAGAACAATTGACTAAAGAGGAATGGCAGGCAATCAATAAGTTGCTGAGTTACCAACAAGATGAGGACTTACCATCACATTCTGGGAAGGATGCGCAGAACATGGTACAGTTTTTGTTTACAGTATCGATTAATCAGGCTGCCGCAAGAATCATTAACATTAATCAGACTGAGATTGTTTGCGGAAGATTTGAGCAACTTTCTGTGTCAACCAAGTTAAAACAGCGGAGCACCTACTGTGATGTGTTACTGAAATTTTATGGTTTATCTGCTCCAGAAGGTTCACTTGCTCAGAGTGTCTCTAGCGAGCAAAAGGCAAATGCACTGGCTGCTAGCTTTATACACATGCCAGTTGGGGAAAATATTGGCTGGAGGCTATCTGCGACTATTTCTCCATGCTATGTGACGCCCTCACCAGTGGAAAGGGTTCAAGTTCGGAAAAATATTTTTATGGACAGCTGTGATCGTTTTTTAGAGTTTTTGAGGAGGAGTAACGAAGTTAGCCCCACTGTTGCATTGGAAACTGCAGCAGCTTTGCAGATTAGGATCAGCAAAGGAATTATCACTTTTAATATCATCATTTGCCCGTTATTTGCTCTAGATATTGATCTTGATGCCCCAAAAGTTAGAGTTCCTCTTAGATCATGCGACTCTTCCAAATGTGACAGTCATTTTCTTTTGGATTTTGGTCATTTTATGCTGCGGACCATGGGTTCCCAGTCTGATGAACGAAGACATAGTTTGTATTCTCGGTTTTTTATATCTGGAAGAGATATTGCTGCATTGTTTAGGGATTGTGGTCCTGAATGTCAGAAATGCTCAGATTATAGTAATCAATCCATTGTTTCTCCTTTACCAAAGGAGGAATCTCACAACGTTTATCCTCTTCTTGATCAGTGTGGAATGGCAGTTATAGTAGATCAGATAAAGGTACCTCACCCAAGTTACCCATCTACACGAATCTCTATTCAAGTGCCTAACCTTGGCATTCATTTCTCACCGGCAAGATGCTGCAAACTCATGGAATTATTAAATACTATCTATGGTAAAATGGAGACTTATAGTCAACACTCGGATACAGGTGGTAATTCTCAACCTGTACTTGCTCCATGGGGTCCTGTGGATCTCACTACCGATGCAAGAATCCTAGTGTGGAGGGGTATAGGCAATTCAGTGGCTCAGTGGAAGCCTTGTTATATTGTGCTGTCGGGCTTGTATATATACGTTTTGGAGTCGGGAAAGTCCCAGATTTACCAACGCTATATGAGTGTCGCCGGCAAGCAAATCCATGAAGTTCCATCAACGAGTGTGGGTGGATCGTTGTTTTGTATTGCACTGAGTTCTAGAGGCATGGACATTCAGAAGGCTTTGGAATCTTCAAGTACCTGGGTGATAGAATTTCAGAATGAAGAGGAGAAGGGCTTTTGGACAAAAAGGCTTTTACAAGCGACATATCTAGCTTCTGCTCCTCCATCGATGGATATACTAGGTGAAACTGGTGATGGTGCATCTCAGCTCATTGAGCGTCATACACCCAATATGAAAGCAGCGAACCTTGTTATAAACGGAGCATTGGTGGAAGCTAAGCTGTTAATATACGGAAAGACTGGAGATGAAGTTGATAATAAACTTGATGAGATTCTGATTCTTGAGCTGCTTGCTTCTGGAGGAAAGGTCCACATAATTCTTGGTGATGATGATCTTTCAGTCAAAACGAAACTACATTCCTTGCATATTAAGGATGAACTTCAAGGCCATTTATCAACAAGTTCACAGTATTTAGCTCGCTCTGTACTATCAAATGAGAAATTATCTTCTTCTCCTGGAACATTTGATCCTAATGGGATACGAACGGCTACTGCAATTATTGAGGAGGATGATAGTTTTAAGGATGCATTGCCTGATTTTTTATCTCTATCTGATGTTGGTAGTTACGAGTCCTCTGGACGTGAGTCTACTGAAACAATATTTAATGAAAATGATCTAGGCAAAGGGAAGGGCACATCCAGTGACATATTTTATGAGGCAGAGGACAGTGAAGATTCTAACTTTGTGGCTGTAACCTTCTTGACGAGGGGCTCAGATTCACCTGATTATGATGGCATAGACACACAGATGAGTATTCGCATGTCAAAAATGGAATTCTACTGCAACAGACCTACTCTTGTTGCATTAATTGGTTTTGGTTTGGATATAAGTTCCTCAAATTATGTGGAAGTTAGCACAGACTTGCCCAGCTCTTCGGAAGATAAGTCTGTTATGGATAAAGAAAAGGTGGAAGAAAAAGGCCGCGTTAAAGGATTGCTAGGATATGGCAAAAGTCGTGTCGTATTCTACTTAAACATGAATGTTGACAGTGTTTCTATCTATCTTAACATGGAGGATGGATCTCAGCTTGCGATGCTCGTGCAGGAGAGCTTTTTGCTTGACCTTAAGGAGAAGAACATTGCTGGGGTTGGCTATGTGATATACGAAATCCTGTTCAAATTTCATTCCTATTGTGTTGACGATGATGACTACAAAGGATATGATTACAGTTTACATGGTCGACTTTCTGCTGTCCGCATAGTTTTCCTTTATAGATTTGTTCAAGAGATTACAGTTTACTTCATGGGACTAGCGACTCCACATACTGAAGAAGCAGTTAAACTTGTTGATAAAGTTGGGGACTTCGAGTGGTTGATCCAAAAGTATGAAATTGATGGGGCTGCCGCATTGAAGCTAGACCTATCACTAGATACACCCATTATTATTGTTCCCAAGAATTCAAATAGCAAAGAAAAATTCAATTTAATGAGGGAAGTTTCATCCATTGCAAGTCCCAAAAATCAAGTGTTAGAGGAAGATTTTGATGGCGACACTTTGGCAAGTGTTAGTAGTGAAGAACCGGAAATTCTGGTTCCAAATTCCGCATCAGAACAGGAAGATATTATATTTGGGAAAGAGGTTGCCTATCTCTTTCAAACTCCTACCTTCAAACAGTCACCACAGATGTTTTCCTCCTTCATTGAAGCTTACAGTTTGAAGCTTGGAAGGATTCTGGGTGTCAACATGTTGGTAGGGATTAATGGTTGTTTAGGTAAACCAATGATTCAGGAAGGCCAAGGACTTGAGGTTTATGTTCGACGAAGCTTAAGGGATGTTTTCAGAAAAGTTCCAACATTCTCACTTGAAGTAGTGCCAATACTTCCTCCAAGTTTCCGTGGGAAAAAATCCGAGTCAAAGGATACAATGCGTCTGTTGGTTGACATGGTCAACACAAATAGTCAAATCTTACTGTCACGCACAGTTACAATAGTGTCAGTTGTTGTCAATAAGGCCTTGTTAGAGTTGTGTAATGGCATTCAGGAAGAGTCGCCTTTAGCTCTTATAGCACTAGAAGGTCTTTGGGTGTCATATCGTATGACATCATTTCTAGAAACAGACCTCTATTTAACCATCCCTAAGTTTTCTATTCTTGACATTCGCCCTGTTACAAAACCTGAAATGCGGCTTATGCTTGGGTCATCAACTGACACTTCAAAACAAGCTCCTTTGGAGAATGTTCCATTCCTGAAGAAAAACAGCTTTGGGAAGGCATATTCTGAAGGTAACCTCGATATGGATGTCCCTGTTGCTACAATGTTCGTGCTGGACTATCGTTGGCGAAAGGAATCTCAATCGTTTGTTCTACGGGTCCAACAACCTCGAGTCCTTGTTGTACCAGATTTTCTTCTCGCTGTGGTTGAGTTTTTTGTTCCTGCGTTGAGAACTATAACTGGAAGAGAGGAAACAATGGACCCCAAGAATGATCCCATTAGTAAAAACAACAGCATAGTACTGTCTGGTTCAACTCACAGGCAAAGTGAAGATGTGATTTTGCTGTCCCCAAGTAGACAGCTGATAGCAGATACCTTAGGTGTTGATGATTATACATATGATGGTTGTGGAAACATTATTCGTCTAGTGGAAGAAACAGATGGCAAGGAACCACACTCAGGGAGATCTCAACCAATTATTAATGGTTCTCTCTTGAGAAAGTATACGTACCTGGGGAATGATAGCAGCTACTCTGTGTCCAAAGAGGATGATGTTGATATTATCTTTCTGGATACCCTTTCATCTGACGAAGAGAAGGAGAATACCGCATCCATTCATGAAACATCAGATGCTTCAAATATTTCATCATCTTTGGAAAGTGATCAAAGTACACTTCGTAGTTTCACATTTGAAACTCAGGTGGTTTCTCCAGAATTCACATTCTATGATGGCACTAAATCTTCTCTAGATGACTTGTCGTATGGCGAGAAGCTTCTTCGAGCGAAATTGGATATGAGTTTCATAGGTCTAGAGGCCATTAAGGAACTGACTGAAAACATGAGCAAGATCCTTCAGCAGCCAGAGGACAAGAAAATGTCAATCGATAATCCGAAAACATTGAACTCATGTTCAATAACTTCGAATATCAAAGGACAGCGATTGAAGAAACAAAAAGGGCAATATCGTCCTTGGCCAAGGGAATATTGCGTGTTACGATGCCTGAGGACAAGCACGGCCACCCCTAATGAAAATACTGAAAACATGAGCAAGATCCTTCAGCAACCAGAGGACAAGAAAATGCCAACCGATAATCCGAAAACATTGAACTCATGTTCAATAACTTTGAAGATCAAAGGACGGCGATTGAAGAAACACAAAGGGAAATATCGTCCTTGGCCAAGGGAATATTGCGTTTTACGACGCCTGAGGACAAGCACGAACACCCCTAATGGAAATACCTAG 6096 41.08 MRVLHLLRRYLGEYVQGLSLEALRISVWKGDVVLKDLKLKTEALNSLRLPVTVKAGFVGTITLKFLEFVEPFLCPPAGRHPIYPNPSSPPILGLLVKSVTQAFCVLTLYPFPHPRSSLLLQLQMKQIYPLGKKNKVDDKGKKVVMVSNRNSYHVPWKSLGKEPVIVLIDRVFVLAHPALDGQTLKEEDREKLFEAKLQQIEEAESATLEAISRSKLGNPSSGTSWLGSLISTIIGNLKISISNVHIRYEDSVSNPGYPFCTGVTLAKLAAVTMDEQGNETFDTSGALDKLRKLVQLDRLAMYHDSNTLPWSLDNKWEDLSPKDWIEVFEDGINEPTADHGLGHKWAVNRNYLVSPINGILKYHRLGNLERNDPEIPYEKASLVLGDVSLTMTELYAGSLQRLSNTSTTEIREIEKDLDSKVILLWRRTNSEDTSDGDASEGSHLGVEQLTKEEWQAINKLLSYQQDEDLPSHSGKDAQNMVQFLFTVSINQAAARIININQTEIVCGRFEQLSVSTKLKQRSTYCDVLLKFYGLSAPEGSLAQSVSSEQKANALAASFIHMPVGENIGWRLSATISPCYVTPSPVERVQVRKNIFMDSCDRFLEFLRRSNEVSPTVALETAAALQIRISKGIITFNIIICPLFALDIDLDAPKVRVPLRSCDSSKCDSHFLLDFGHFMLRTMGSQSDERRHSLYSRFFISGRDIAALFRDCGPECQKCSDYSNQSIVSPLPKEESHNVYPLLDQCGMAVIVDQIKVPHPSYPSTRISIQVPNLGIHFSPARCCKLMELLNTIYGKMETYSQHSDTGGNSQPVLAPWGPVDLTTDARILVWRGIGNSVAQWKPCYIVLSGLYIYVLESGKSQIYQRYMSVAGKQIHEVPSTSVGGSLFCIALSSRGMDIQKALESSSTWVIEFQNEEEKGFWTKRLLQATYLASAPPSMDILGETGDGASQLIERHTPNMKAANLVINGALVEAKLLIYGKTGDEVDNKLDEILILELLASGGKVHIILGDDDLSVKTKLHSLHIKDELQGHLSTSSQYLARSVLSNEKLSSSPGTFDPNGIRTATAIIEEDDSFKDALPDFLSLSDVGSYESSGRESTETIFNENDLGKGKGTSSDIFYEAEDSEDSNFVAVTFLTRGSDSPDYDGIDTQMSIRMSKMEFYCNRPTLVALIGFGLDISSSNYVEVSTDLPSSSEDKSVMDKEKVEEKGRVKGLLGYGKSRVVFYLNMNVDSVSIYLNMEDGSQLAMLVQESFLLDLKEKNIAGVGYVIYEILFKFHSYCVDDDDYKGYDYSLHGRLSAVRIVFLYRFVQEITVYFMGLATPHTEEAVKLVDKVGDFEWLIQKYEIDGAAALKLDLSLDTPIIIVPKNSNSKEKFNLMREVSSIASPKNQVLEEDFDGDTLASVSSEEPEILVPNSASEQEDIIFGKEVAYLFQTPTFKQSPQMFSSFIEAYSLKLGRILGVNMLVGINGCLGKPMIQEGQGLEVYVRRSLRDVFRKVPTFSLEVVPILPPSFRGKKSESKDTMRLLVDMVNTNSQILLSRTVTIVSVVVNKALLELCNGIQEESPLALIALEGLWVSYRMTSFLETDLYLTIPKFSILDIRPVTKPEMRLMLGSSTDTSKQAPLENVPFLKKNSFGKAYSEGNLDMDVPVATMFVLDYRWRKESQSFVLRVQQPRVLVVPDFLLAVVEFFVPALRTITGREETMDPKNDPISKNNSIVLSGSTHRQSEDVILLSPSRQLIADTLGVDDYTYDGCGNIIRLVEETDGKEPHSGRSQPIINGSLLRKYTYLGNDSSYSVSKEDDVDIIFLDTLSSDEEKENTASIHETSDASNISSSLESDQSTLRSFTFETQVVSPEFTFYDGTKSSLDDLSYGEKLLRAKLDMSFIGLEAIKELTENMSKILQQPEDKKMSIDNPKTLNSCSITSNIKGQRLKKQKGQYRPWPREYCVLRCLRTSTATPNENTENMSKILQQPEDKKMPTDNPKTLNSCSITLKIKGRRLKKHKGKYRPWPREYCVLRRLRTSTNTPNGNT 2031
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21853844 21925390 - Lsi05G014000.1 Lsi05g01400 663892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01400 2031 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 640 1258 - -
Lsi05g01400 2031 MobiDBLite consensus disorder prediction 1088 1107 - -
Lsi05g01400 2031 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 1403 1886 - -
Lsi05g01400 2031 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 1271 1374 - -
Lsi05g01400 2031 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 1403 1886 - -
Lsi05g01400 2031 SUPERFAMILY PH domain-like 834 933 - -
Lsi05g01400 2031 Pfam N-terminal region of Chorein or VPS13 5 201 IPR026854 -
Lsi05g01400 2031 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 1271 1374 - -
Lsi05g01400 2031 Pfam Vacuolar sorting-associated protein 13, N-terminal 225 399 IPR031646 -
Lsi05g01400 2031 Pfam Repeating coiled region of VPS13 643 792 IPR031642 -
Lsi05g01400 2031 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 640 1258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01400 K19525 VPS13A_C; vacuolar protein sorting-associated protein 13A/C - zju:107404665 1714.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01400 Lsi-Chr5:21853844 Lsi06g00682 Lsi-Chr6:10649897 2.62E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g222 . Blo12g00381 Bda03g00826 . Bpe04g00783 . Bma04g00725 . . . . Cma14g01572 . Car14g01385 . . Cpe03g01313 Bhi01g01112 . . . Hepe05g1356 . Lcy11g1316 . . . . . . . Cone14ag0690 . . . Lsi05g01400 . . . . . . . . . . . . . Cmo14g01605 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006514 1 2 2 1 1 1 1 3 2 1 1 1 1 0 2 1 1 1 1 1 1 0 1 3 1 2 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01400 Lsi_Chr05 FPKM 25.877602 29.833929 36.36348 36.36409 32.672775 33.981468 30.488546 46.515453 46.936504 43.62476