Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01401 ATGAAAAGGAGATCTTATATTGTAGTTTTTCTAAATCATCCGACCAAAGATTCTCATAGTAGAAGCAGCGGGTCTTTGGAATCTAAAGTAGTGAGAGCATCAGAACCTGAACGGCCTCGTCTTATAAATGTTGAAGGACTCAGTGATCTAATCGCTCCAGATAATATAACTAAGGGAGAGTCAGAGGCTTTACTTCTGTGGTCTCATATGCATCCCCTGTTGTCGAGGTCTGATTTTTTACCCGAAACAGTACAAGGGGTTAAAGAGGCTTCCATTGCATGGGGTGACTTATTGTCAGCTATTAAAGCAGAAAAGACCACTAAAGTTGGTAATACCAACAACTCGAAGCATGAAGTTTGCCCTTCCTCTGTAAGCTCACCTAACAAAATTTCACGTACTGGGGGAATTATTCTTGAAATCCCTTGTGGTTTAGTTGAGGATTCTTCCATTACCCTGGTTGGCATACCTAATGGAGAGCATGGGGGCTTCCGGATTGAACTGTTAGGCTCTCAGGCTTCCGGAGAGCCAAATCCCCCAATTATCTTGCATTACAATGTCAGTTTGCCTAGTGACAACATGTCTGACGAATCATTTATAGTACAAAATACATGGACTAATGAACGAAAGTGGGGCAATGAGGAGAGATGGTGGTTGAGTTTCCATTGTGTCATTCTTGTTAGTTTTGATGGACTTGTTCTTTGTAATGAACGTGTTCTCAGTAGCACCAGAGCAGAAAATATCAGTATGCATCATGATAATGGTGATACCAGCCTGGCCAATATTTCCAGAGGGCAAGCCCATGAAAGTGCCAATTTTCCATTCATCGAGGGGAATTTGTTCACTGCAACATTATGGATTGGTTTGGAGGGATTCCATATGACTGTCAGTGGAAGACATGAAACCTCATTCGAATATAGGGAGAAACTTGAACCATGGACAGTTAATCGAGTCAAGGTAGCAGGTGGTTTGGATCTCCTCTCTTCCTTGGCTAAAGGCTTACCAGTTTCTGAAGATCATGATTTTGTTAACTCTGAGCACCTTGGAGCTCCCCCTATCCGCAAGAGAAGACTTCTGATGTTGGTTGGGGTTTTTTCTACTGGAAACAATTTCAACCGTCGCATGGCCTTGAGAAGGACTTGGATGCAGTATGAGGCTGTACGTAGTGGTGATGTAGCGGTCCGATTTTTCATAGGCTTTGATAAGAATGCACAAGTAAATTTGGAGCTTTGGAGAGAAGTGGAAGCTTATGGTGATATTCAGTTGATGCCGTTTGTTGATTATTACAGCTTGATCACTTTGAAAACAATTGCAATTTGCATTTTTGGGACCAAGATCCTTCCTGCAAAATATATCATGAAGACAGATGATGATGCATTTGTTAGAATTGATGAAGTTTTATCTGGCGTAAAGAGCAGGCCAGCTACTGGCCTACTGTATGGTCTTATTGCCTTTGATTCATCACCCCATAGAGATAAAGACAGCAAGTGGCATATTAGTGAGGAGGTACCTGGCTCGAAACTTGATCTTATGTCAGTTTGA 1539 41.98 MKRRSYIVVFLNHPTKDSHSRSSGSLESKVVRASEPERPRLINVEGLSDLIAPDNITKGESEALLLWSHMHPLLSRSDFLPETVQGVKEASIAWGDLLSAIKAEKTTKVGNTNNSKHEVCPSSVSSPNKISRTGGIILEIPCGLVEDSSITLVGIPNGEHGGFRIELLGSQASGEPNPPIILHYNVSLPSDNMSDESFIVQNTWTNERKWGNEERWWLSFHCVILVSFDGLVLCNERVLSSTRAENISMHHDNGDTSLANISRGQAHESANFPFIEGNLFTATLWIGLEGFHMTVSGRHETSFEYREKLEPWTVNRVKVAGGLDLLSSLAKGLPVSEDHDFVNSEHLGAPPIRKRRLLMLVGVFSTGNNFNRRMALRRTWMQYEAVRSGDVAVRFFIGFDKNAQVNLELWREVEAYGDIQLMPFVDYYSLITLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSGVKSRPATGLLYGLIAFDSSPHRDKDSKWHISEEVPGSKLDLMSV 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21928532 21933010 - Lsi05G014010.1 Lsi05g01401 663893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01401 512 SUPERFAMILY Concanavalin A-like lectins/glucanases 138 327 IPR013320 -
Lsi05g01401 512 Pfam Galactoside-binding lectin 137 327 IPR001079 GO:0030246
Lsi05g01401 512 Pfam Galactosyltransferase 371 501 IPR002659 GO:0006486|GO:0016020|GO:0016758
Lsi05g01401 512 Gene3D - 132 328 - -
Lsi05g01401 512 SMART Gal_bind_lectin_2 140 330 IPR001079 GO:0030246
Lsi05g01401 512 CDD GLECT 138 327 IPR001079 GO:0030246
Lsi05g01401 512 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 51 501 IPR002659 GO:0006486|GO:0016020|GO:0016758
Lsi05g01401 512 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 136 332 IPR001079 GO:0030246
Lsi05g01401 512 PANTHER BETA-1,3-GALACTOSYLTRANSFERASE GALT1 51 501 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01401 K20843 GALT2S; hydroxyproline O-galactosyltransferase 2/3/4/5/6 [EC:2.4.1.-] - csv:101223060 866.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00417 Lsi-Chr4:4030505 Lsi05g01401 Lsi-Chr5:21928532 2.81E-128 dispersed
Lsi04g00420 Lsi-Chr4:4041499 Lsi05g01401 Lsi-Chr5:21928532 2.20E-138 dispersed
Lsi05g01401 Lsi-Chr5:21928532 Lsi05g00585 Lsi-Chr5:7278940 8.07E-06 dispersed
Lsi05g01401 Lsi-Chr5:21928532 Lsi04g00490 Lsi-Chr4:4523640 5.07E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g220 . . . . . Bpe14g01082 . . . . . . Car06g01342 . . Cpe08g00138 . Bhi01g01110 . . . Hepe05g1357 . Lcy11g1319 . . . . . . . . . . . Lsi05g01401 . . Cme06g00818 . . . . . . Bma02g00943 . . Cmo06g01573 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011276 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01401 Lsi_Chr05 FPKM 17.369858 19.271578 15.004944 18.080204 32.591644 31.675076 33.955318 12.075738 12.353148 13.620685