Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01403 ATGGGGGGATCGAAAGGCGTGGTGAAGCACATTTTGCTGGCGAAATTCAAAGATGGAATCACAGAGGATCAGATCGACAAACTCATCAAGGGATATGCCAATCTCGTCAATCTCATTGAACCTATGAAGGCTTTCCAATGCGGCAAGGATGTTAGCATTGAAAATCTACACCAAGGTTTCACTCACGTCTTTGAATCCACCTTTGAGAGTACGCAGGGCATAGCAGAGTATATATCTCATCCTGCGCATGTGGAGTATGCAAACTTGTTCCTTTCTTCCTTGGACAAAGTTATTGTTATCGACTACAAACCGACGTTAATTTACAACGAAGGCAAAAAGTAG 342 42.98 MGGSKGVVKHILLAKFKDGITEDQIDKLIKGYANLVNLIEPMKAFQCGKDVSIENLHQGFTHVFESTFESTQGIAEYISHPAHVEYANLFLSSLDKVIVIDYKPTLIYNEGKK 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21935637 21939996 + Lsi05G014030.1 Lsi05g01403 663895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01403 113 Pfam Stress responsive A/B Barrel Domain 8 103 IPR013097 -
Lsi05g01403 113 PANTHER STRESS-RESPONSE A/B BARREL DOMAIN-CONTAINING PROTEIN HS1 4 106 - -
Lsi05g01403 113 SMART Dabb_2 8 104 IPR013097 -
Lsi05g01403 113 SUPERFAMILY Dimeric alpha+beta barrel 8 105 IPR011008 -
Lsi05g01403 113 PANTHER - 4 106 IPR044662 -
Lsi05g01403 113 ProSiteProfiles Stress-response A/B barrel domain profile. 8 102 IPR013097 -
Lsi05g01403 113 Gene3D - 2 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01403 - - - csv:101202790 204.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01403 Lsi-Chr5:21935637 Lsi10g01187 Lsi-Chr10:16135086 2.59E-11 dispersed
Lsi05g01403 Lsi-Chr5:21935637 Lsi05g01409 Lsi-Chr5:22011876 1.64E-51 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g22 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi05g01403 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003452 1 2 1 1 1 3 1 2 3 1 3 3 1 1 1 1 2 0 1 2 1 1 1 1 1 2 1 2 1 5 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01403 Lsi_Chr05 FPKM 9.853522 11.059834 5.598285 5.76434 26.795362 24.442274 26.415649 4.700006 4.597114 4.499298