Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01408 ATGAACATGCAGGCGTATTATTCATCTATAAAAAGGGCTCCTGTGTCTCCCTTCTTCCGTATTTATTGGAATTTTCAAATTCGAAAACTCTCTCTTTCGTTCAGACAATTTTCAGTCCGATCGTTCATCAATTTAACTAACAGAGTTGTATATAAGATTCTTATTGGCTTCAAATCCTCTTCGATGTTTGGAACAATCGCATCGCCCAAGCCAAAGTATAAGAGGATCAGTAGATTGTCGAAATTAGAGTCGAATGGATGTAGCAGTGGTAGAAATAGGTGTTTGATTGCAAATGTAGCTTCGGATTTTAGAAATCAGTCAACATCGGCGGAGCCTCATGTCAAACAGAAGAACTTTGACACAATCTATATTCAAGGAGGGTTTAAGGTTAAGCCATTGGTGATAGAGAGTATTGAGACGGATCATGATATTGTTAAAGAAGATAAAAAGGTGTCTGAGGTTGAGGGATTGGGTAGTTTGAAGGGTTCTAATTACTCTAGAGTTGAGAGAGAGGTATCCAAGATTGAAAAGGAGACATGGAAATTGCTTCGAGACTCTGTTGTGTACTATTGTGGACATCCTGTCGGAACTGTTGCTGCTAATGATCCAGCTGACACTCAGCCACTGAATTACGACCAGGTCTTTGTTCGTGACTTTGTACCATCAGCCTTGGCCTTCTTGTTAAATGGAGAAGAGGAGATTGTCAAGAATTTTCTCCTTCACACCTTGCAATTACAGAGTTGGGAGAAAACTGTCGACTGTTACAGCCCTGGACAAGGGTTGATGCCAGCAAGTTTCAAAGTCAGAAGCCAACCTCTTGATGGAAGCGATGAAGCTTTCGAGGAAGTTCTTGACCCTGATTTTGGTGAATCTGCCATTGGTCGTGTTGCACCGGTTGATTCTGGGTTGTGGTGGATTATTTTGTTAAGAGCTTATGGAAAGATCACAGGAGACTACGCATTGCAGGAACGAGTCGATGTACAGACAGGCATAAGACTGATTCTTAATCTCTGCTTGACGAATGGGTTTGACATGTTTCCTACTCTGTTGGTCAGTGATGGTTCCTGCATGATTGATAGACGAATGGGCATTCATGGACACCCACTTGAAATTCAAGCATTGTTCTATTCGGCCTTACGCTGTTCCAGAGAGATGCTGATTGTCAACGACTCAACTAAGAATTTGGTGGTTGCCATCAGCAATAGACTCAGTGCACTCTCCTTCCATATTCGGGAATATTACTGGGTCGATAAGAACAAACTCAACGAAATTTATCGTTACAAAACAGAGGAATATTCTACAGATGCTGTGAATAAATTCAATATATATCCTGAACAAATTCCTAATTGGCTGGTGGACTGGATTCCTGGGGAGGGTGGCTACCTTATTGGAAATCTACTGCCTGCTCACATGGACTTTAGGTTTTTCACGCTCGGAAATCTTTGGTCCATTGTGTCGTCACTCGGGACTCCAAAACAGAACGAGGGCATTTTGAACTTGATTGAAGCCAAATGGGATGATCTCATATCTAACATGCCTCTCAAGATATGCTTCCCAGCTATGGAGTACGATGAATGGCGCATAATAACTGGCAGCGACCCTAAGAACACTCCTTGGTCATACCATAATGGAGGATCTTGGCCAACACTCTTGTGGCAGTTCACACTGGCCTGCATGAAGATGGGGAGGCCAGAGCTAGCAAGGAATGCCATTGCAGTGGCTGAGAAGAAGCTTTCAGTCGATCGTTGGCCCGAGTACTACGATATGCGCAGTGCAAGATTAATAGGGAAACAATCACGACTCTTCCAAACATGGACGATCGCTGGTTTCTTGACATCAAAGTTGCTTTTGGAGAACCCAGAGAAGGCATCTTTGTTGTTCTGGGAGGAGGATTATGAGATTCTTCAGAACTGCGTTTGTGCACTCGGCAAAGCCAATGGAAACAAGTGCTCTCGCCATCGTCATCGCCAGCATCCGAAACCAAATAATCTCAACCAGTAA 2001 43.28 MNMQAYYSSIKRAPVSPFFRIYWNFQIRKLSLSFRQFSVRSFINLTNRVVYKILIGFKSSSMFGTIASPKPKYKRISRLSKLESNGCSSGRNRCLIANVASDFRNQSTSAEPHVKQKNFDTIYIQGGFKVKPLVIESIETDHDIVKEDKKVSEVEGLGSLKGSNYSRVEREVSKIEKETWKLLRDSVVYYCGHPVGTVAANDPADTQPLNYDQVFVRDFVPSALAFLLNGEEEIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRSQPLDGSDEAFEEVLDPDFGESAIGRVAPVDSGLWWIILLRAYGKITGDYALQERVDVQTGIRLILNLCLTNGFDMFPTLLVSDGSCMIDRRMGIHGHPLEIQALFYSALRCSREMLIVNDSTKNLVVAISNRLSALSFHIREYYWVDKNKLNEIYRYKTEEYSTDAVNKFNIYPEQIPNWLVDWIPGEGGYLIGNLLPAHMDFRFFTLGNLWSIVSSLGTPKQNEGILNLIEAKWDDLISNMPLKICFPAMEYDEWRIITGSDPKNTPWSYHNGGSWPTLLWQFTLACMKMGRPELARNAIAVAEKKLSVDRWPEYYDMRSARLIGKQSRLFQTWTIAGFLTSKLLLENPEKASLLFWEEDYEILQNCVCALGKANGNKCSRHRHRQHPKPNNLNQ 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22007593 22011136 + Lsi05G014080.1 Lsi05g01408 663900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01408 666 PANTHER ALKALINE/NEUTRAL INVERTASE C, MITOCHONDRIAL 82 658 - -
Lsi05g01408 666 Gene3D - 207 608 IPR012341 GO:0005975
Lsi05g01408 666 PANTHER - 82 658 IPR024746 GO:0033926
Lsi05g01408 666 SUPERFAMILY Six-hairpin glycosidases 192 623 IPR008928 GO:0005975
Lsi05g01408 666 Pfam Alkaline and neutral invertase 180 620 IPR024746 GO:0033926
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01408 - - - csv:101218588 1156.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00139 Lsi-Chr4:1594249 Lsi05g01408 Lsi-Chr5:22007593 0 dispersed
Lsi05g01408 Lsi-Chr5:22007593 Lsi11g00650 Lsi-Chr11:6843471 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g29 . . . . . Bpe14g01086 . . . . . Cma14g01577 . Car14g01389 Sed02g1125 . Cpe03g01317 Bhi01g01103 Tan10g1091 Cmetu06g2133 . Hepe05g1362 . Lcy11g1325 . . . . . . . . . Cone7ag0090 Cone4ag0096 Lsi05g01408 . . Cme06g00802 Blo02g00469 . . . . . Bma02g00939 . . . Cmo14g01610 . . . . . . . . . . . . . Cla05g00719 Cam05g0788 Cec05g0793 Cco05g0791 Clacu05g0778 Cmu05g0742 Cre05g0818 . Csa03g01532 Chy06g00769 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002344 1 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 4 2 2 2 1 2 2 2 2 2 3 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01408 Lsi_Chr05 FPKM 0.404714 0.0 0.557327 0.0 0.0 1.438557 1.281093 0.480864 0.716474 0.685467