Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01410 ATGGCGAAGCACGAGGACCTTCCGATCCCTGTTTTCTCTTCTCTCGACCCGGTTTATGGCGATGGATCTCAGCTTGAAGAAGCTCGGCTTCGATTTGATCATCTCAAGGCCAAGTTTCTTCAAGTGTTCGGCCATCCTCCCGATGTCTTTGCTCGTTCACCAGGTAGAGTGAACTTGATTGGAGAGCACATTGACTATGAAGGATATTCGGTGTTGCCGATGGCGATTCGGCAAGATACGATCGTGGCAATACGGAAGCATGACGCCGGAGAGGCGAATCATCTTCTCAAAATTGCTAATGTTAATGATAAATACGCGATATGTACTTATCCTGCTGATCCTGATCAGGAAATTGACTTGAAGAATCACAAATGGGGACACTATTTCCTCTGCGGGTACAAAGGCTATTACGAGTTTGCTAAATCAAAAGGACAAGATGTTGGCGTGCCAGTTGGACTTGATGTTCTTGTTGATGGAACAGTGCCTACAGGATCTGGATTATCAAGCTCTGCTGCATTTGTTTGCTCTGCTACCATTGCTATCATGGCTGCTCTTGGTGCCAACTTCCCCAAGAAAGAAATCGCCCAACTTACCTGTGATTGTGAACGACACATTGGTACACAATCTGGTGGAATGGATCAGGCAATCTCTGTCATGGCCAAATCTGGGTTTGCAGAGCTGATTGACTTCAACCCTATTCGTGCTACTGATGTGCAACTTCCTGCTGGTGGGACTTTTGTTATAGCCCATTCTCTAGCTGAATCACAGAAAGCAGTCACTGCTGCCACAAATTATAATAACAGAGTGGTAGAATGCCGACTTGCTTCTATTGTTCTAGGCATAAAGCTTGGGATGAAACCAGAAGAAGCAATAAAAAAAGTGAACACTTTATCTGATGTGGAAGGGCTATGTCTTTCATTTGCTAAGGAGCGTAACTCTTCAGATCCTGTGCTTGCAGTCAAGGTATTTTCTGTTGATTATTCCCACCAACAAAGGATACCCATGAAGAGATGGAGTTTTGTGAATGCCCGTAGGCATCGGGTGCCATCCCAGCATGGGAATGAGGAACTGTTGAAGGAGGAACCCTATACAGCTGAAGAAATTGAACAAATTACTGTGGACAATCTGCCGTCCGTTTTAGGCAACTCTCCAACTTCATTGGACGTTTTAAAAGCTGCCAAGCATTTCAAGTTGTATCAGCGAGCGTCCCACGTGTACTCTGAAGCCAGACGGGTCTATGCTTTCAAGGATACAGTTTCATCCGGTTTAAGTGAGGAAGAAAAGCTTAAGAAACTCGGTGATCTTATGAATGATAGCCACTACAGCTGTAGCGTTCTTTATGAATGCAGCTGTCCCGAGTTAGAGGAACTAGTAAAGATATGCCGGGACAACGATGCTCTCGGAGCCAGGCTAACTGGAGCAGGATGGGGAGGCTGTGCAGTCGCTCTCGTAAAAGAGGCCATTGTTCCCCAGTTCATTCTGAATCTGAAGGAAAAGTTCTACAAATCGAGGATCGAACGAGGGGTCATAGGCAAGAACGACGTCGATCTCTACGTCTTTGCTTCCAAGCCAGCGAGCGGAGCTGCCATCTTCCAGTTTTAA 1602 45.94 MAKHEDLPIPVFSSLDPVYGDGSQLEEARLRFDHLKAKFLQVFGHPPDVFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKHDAGEANHLLKIANVNDKYAICTYPADPDQEIDLKNHKWGHYFLCGYKGYYEFAKSKGQDVGVPVGLDVLVDGTVPTGSGLSSSAAFVCSATIAIMAALGANFPKKEIAQLTCDCERHIGTQSGGMDQAISVMAKSGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESQKAVTAATNYNNRVVECRLASIVLGIKLGMKPEEAIKKVNTLSDVEGLCLSFAKERNSSDPVLAVKVFSVDYSHQQRIPMKRWSFVNARRHRVPSQHGNEELLKEEPYTAEEIEQITVDNLPSVLGNSPTSLDVLKAAKHFKLYQRASHVYSEARRVYAFKDTVSSGLSEEEKLKKLGDLMNDSHYSCSVLYECSCPELEELVKICRDNDALGARLTGAGWGGCAVALVKEAIVPQFILNLKEKFYKSRIERGVIGKNDVDLYVFASKPASGAAIFQF 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22033559 22040079 - Lsi05G014100.1 Lsi05g01410 663902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01410 533 Pfam Galactokinase galactose-binding signature 38 86 IPR019539 -
Lsi05g01410 533 ProSitePatterns GHMP kinases putative ATP-binding domain. 161 172 IPR006203 GO:0005524
Lsi05g01410 533 SUPERFAMILY GHMP Kinase, C-terminal domain 245 508 IPR036554 -
Lsi05g01410 533 Gene3D - 239 502 - -
Lsi05g01410 533 PRINTS Mevalonate kinase family signature 159 181 - -
Lsi05g01410 533 PRINTS Mevalonate kinase family signature 53 77 - -
Lsi05g01410 533 PRINTS Mevalonate kinase family signature 468 485 - -
Lsi05g01410 533 PRINTS Mevalonate kinase family signature 201 220 - -
Lsi05g01410 533 Gene3D - 264 448 - -
Lsi05g01410 533 TIGRFAM gal_kin: galactokinase 34 503 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Lsi05g01410 533 PIRSF Galactokinase 23 533 IPR006206 GO:0005524|GO:0005737|GO:0016301|GO:0016773
Lsi05g01410 533 SUPERFAMILY Ribosomal protein S5 domain 2-like 27 242 IPR020568 -
Lsi05g01410 533 ProSitePatterns Galactokinase signature. 55 66 IPR019741 -
Lsi05g01410 533 Pfam GHMP kinases C terminal 427 501 IPR013750 -
Lsi05g01410 533 Pfam GHMP kinases N terminal domain 154 219 IPR006204 GO:0005524
Lsi05g01410 533 PRINTS Galactokinase signature 400 414 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Lsi05g01410 533 PRINTS Galactokinase signature 55 73 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Lsi05g01410 533 PRINTS Galactokinase signature 152 170 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Lsi05g01410 533 PANTHER MEVALONATE KINASE/GALACTOKINASE 1 326 - -
Lsi05g01410 533 PANTHER MEVALONATE KINASE/GALACTOKINASE 355 532 - -
Lsi05g01410 533 PANTHER BNAA01G32760D PROTEIN 1 326 - -
Lsi05g01410 533 PANTHER BNAA01G32760D PROTEIN 355 532 - -
Lsi05g01410 533 Gene3D - 37 238 IPR014721 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01410 K18674 GALK2; N-acetylgalactosamine kinase [EC:2.7.1.157] - csv:101222674 937.562
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01410 Lsi09g01447 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00823 Lsi-Chr5:13048248 Lsi05g01410 Lsi-Chr5:22033559 3.41E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g44 . . . . . Bpe14g01089 . . . . Cma06g01572 Cma14g01579 Car06g01336 Car14g01390 Sed02g1128 Cpe08g00143 Cpe03g01318 Bhi01g01101 Tan10g1088 Cmetu06g1064 . Hepe05g1365 . Lcy11g1328 . . . . . . . . Cone15ag0720 . . Lsi05g01410 . . Cme06g00801 Blo02g00471 Blo07g00132 . Bda13g00226 . . Bma02g00937 . . Cmo06g01566 Cmo14g01611 . . . . . . . . . . . . . Cla05g00717 Cam05g0784 Cec05g0790 Cco05g0786 Clacu05g0774 Cmu05g0739 Cre05g0813 . Csa03g01530 Chy06g00767 .
Vvi5g165 . . . . . . . . Cmo08g01211 Cmo17g00327 . . . . . . . . . . . . . . Cla06g00466 Cam06g0500 Cec06g0502 Cco06g0501 Clacu06g0484 Cmu06g0485 Cre06g1259 . Cone15ag0759 Cone7ag0136 . Lsi05g01410 Csa06g01793 Chy11g01525 . Blo02g00499 . . . . . . . Sed09g0251 . . Cma08g01236 Cma17g00338 . Car17g00311 Cpe12g00288 Cpe17g00034 Bhi12g02039 Tan06g2694 Cmetu11g2071 Lac11g0854 Hepe03g0090 . Lcy12g0748 . . . . . . . Lsi09g01447 . . Cme11g02028
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005121 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01410 Lsi_Chr05 FPKM 4.373984 3.764322 84.21199 85.89592 411.077301 343.46051 378.724854 7.490954 9.813379 7.403787