Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01411 ATGGAAAAGAAATTTGAAGACTCAATGATGGGGTTTGATAATTCTGCCGGATTTTACTCTCCGGCGGTGTTTTTCGATGAGTTTCCGGCGTCTAATTTTGATTCCTTTTCCAGTATTTTCGACATGCCATGTGATGACCATAAAGCTGCTGCTGCTTCTTGTTCTTCTAATTCCTTTGACTTATTTAGTAGTGGAATTGAAATCCATGATTTTCACAATATTATTAATAATAATAATAATCCTTCTTCTTCTTCTTCTAATTTTTTCGATTTGCTTTCTACGGCGGCTCCGCCTCTTTCCTCACCGGCCTCCACCGTGCCGGAGTCCTCTGAGGTTCTTAATGCTCCACCCACTCCTAATTCTTCCTCTGTTTCTTCCTCCTCCAATGAAGCTTCAGCTGCCATTGAAGAAGTTGACAAGATCAACAACAACACTGAGAAGCCTTCTTCTTCTAAATTGTTGAAGCCAAAAAAGAAGAACCAAAAGAAGCAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGATATTGATCATCTCGACGACGGTTACCGGTGGCGAAAGTACGGTCAAAAAGCCGTGAAGAATAGTCCTTACCCCAGAAGCTATTATCGTTGTACAACAGCCAGGTGCGGTGTGAAGAAGAGAGTAGAACGATCGTCCGGTGACTATTCGATAGTCGTTACGACGTACGAAGGTCAACACACTCACCAAAGTCCGGTAATGCCACGAGGGAGTATCAGAGTTTTACCGGAATCCTCCAACAACGGTCTCATCGCCGATCACGACACCACTACCACCGGACTTTTATTCCAACACAACACTCCCCAACCCTTCGTGTATAGCTCTCCGCCACCGCCATTTCTAACAATCAACTCGTCGGTGGCAGCCGCGAGTCCCCGTCATCCTCCTCCTCCTCCTACTTCCTTCCCATCACCGTTGCCACCACCGTCGCCTCAAGCTTCCTTAGTCCGAGACCATGGGCTTTTGCAGGACTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAGCAAAATGGATGA 1047 45.75 MEKKFEDSMMGFDNSAGFYSPAVFFDEFPASNFDSFSSIFDMPCDDHKAAAASCSSNSFDLFSSGIEIHDFHNIINNNNNPSSSSSNFFDLLSTAAPPLSSPASTVPESSEVLNAPPTPNSSSVSSSSNEASAAIEEVDKINNNTEKPSSSKLLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTARCGVKKRVERSSGDYSIVVTTYEGQHTHQSPVMPRGSIRVLPESSNNGLIADHDTTTTGLLFQHNTPQPFVYSSPPPPFLTINSSVAAASPRHPPPPPTSFPSPLPPPSPQASLVRDHGLLQDLVPLQMRKEPKDEQNG 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22051870 22053690 - Lsi05G014110.1 Lsi05g01411 663903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01411 348 MobiDBLite consensus disorder prediction 100 133 - -
Lsi05g01411 348 SUPERFAMILY WRKY DNA-binding domain 172 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi05g01411 348 Pfam WRKY DNA -binding domain 181 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g01411 348 ProSiteProfiles WRKY domain profile. 175 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g01411 348 MobiDBLite consensus disorder prediction 100 169 - -
Lsi05g01411 348 MobiDBLite consensus disorder prediction 299 320 - -
Lsi05g01411 348 Gene3D WRKY domain 165 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi05g01411 348 MobiDBLite consensus disorder prediction 296 323 - -
Lsi05g01411 348 SMART WRKY_cls 180 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g01411 348 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 57 335 - -
Lsi05g01411 348 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 57 335 IPR044810 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01411 - - - bhj:120088001 493.426
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02490 Lsi-Chr2:31363690 Lsi05g01411 Lsi-Chr5:22051870 9.80E-43 dispersed
Lsi03g01124 Lsi-Chr3:21462995 Lsi05g01411 Lsi-Chr5:22051870 6.14E-46 dispersed
Lsi05g01411 Lsi-Chr5:22051870 Lsi08g00885 Lsi-Chr8:17234479 2.12E-45 dispersed
Lsi05g01411 Lsi-Chr5:22051870 Lsi11g01628 Lsi-Chr11:24630520 5.84E-46 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g48 . . Bda03g01188 . Bpe04g01122 Bpe14g01092 . . . Cmo17g00367 Cma06g01571 Cma14g01581 Car06g01335 Car14g01391 Sed02g1129 Cpe08g00144 Cpe03g01319 Bhi01g01100 Tan10g1087 Cmetu06g2518 Lac11g0974 Hepe05g1368 . Lcy11g1329 Cla06g00419 Cam06g0441 Cec06g0447 Cco06g0446 Clacu06g0428 Cmu06g0427 Cre06g1206 . Cone15ag0722 . Cone4ag0098 Lsi05g01411 Csa06g01861 . Cme06g00800 Blo02g00473 Blo07g00133 Bda11g00494 Bda13g00224 . Bpe13g00706 Bma02g00935 Bma06g01458 . Cmo06g01565 Cmo14g01612 . Cma17g00379 . Car17g00350 Cpe12g00331 . . . . . . . . Cla05g00716 Cam05g0783 Cec05g0789 Cco05g0785 Clacu05g0773 Cmu05g0738 Cre05g0812 . Csa03g01529 Chy06g00766 Cme11g02090
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g01362 . 230 481 WRKY Transcription Factor Family AT2G04880 57.8 4.2e-79 292.4
Lsi06g00700 . 222 514 WRKY Transcription Factor Family AT5G56270 50.2 2.4e-70 263.8
Lsi02g01215 . 236 476 WRKY Transcription Factor Family AT5G56270 53.2 1.7e-68 257.7
Lsi04g00386 . 15 488 WRKY Transcription Factor Family AT2G03340 53.2 1.1e-120 430.6
Lsi03g00151 . 12 503 WRKY Transcription Factor Family AT2G03340 52.5 1.1e-117 420.6
Lsi02g01215 . 225 488 WRKY Transcription Factor Family AT2G03340 53.6 1.6e-66 250.8
Lsi10g01469 . 86 308 WRKY Transcription Factor Family AT2G03340 50.6 3.7e-60 229.6
Lsi04g00386 . 105 488 WRKY Transcription Factor Family AT1G13960 57.3 1.9e-98 356.3
Lsi02g01215 . 226 494 WRKY Transcription Factor Family AT1G13960 52.1 4.8e-70 261.9
Lsi03g02255 . 161 395 WRKY Transcription Factor Family AT1G13960 52.0 1.0e-64 244.2
Lsi02g01215 . 213 485 WRKY Transcription Factor Family AT4G26640 53.5 7.6e-69 258.5
Lsi10g01469 . 98 308 WRKY Transcription Factor Family AT4G26640 50.8 9.3e-59 224.9
Lsi05g00523 . 70 234 WRKY Transcription Factor Family AT4G26640 50.9 7.4e-40 162.2
Lsi10g01469 . 82 307 WRKY Transcription Factor Family AT2G30250 51.7 8.0e-63 238.0
Lsi02g01215 . 225 475 WRKY Transcription Factor Family AT5G07100 57.7 9.2e-69 256.9
Lsi03g02255 . 153 382 WRKY Transcription Factor Family AT5G07100 57.3 1.2e-68 256.5
Lsi10g01469 . 88 308 WRKY Transcription Factor Family AT5G07100 56.3 2.0e-63 239.2
Lsi02g01215 . 234 582 WRKY Transcription Factor Family AT2G38470 57.0 8.6e-97 351.3
Lsi10g01469 . 99 309 WRKY Transcription Factor Family AT2G38470 59.9 7.3e-72 268.5
Lsi07g01425 . 331 616 WRKY Transcription Factor Family AT2G38470 51.7 2.9e-68 256.5
Lsi04g00386 . 192 443 WRKY Transcription Factor Family AT2G38470 53.7 1.0e-65 248.1
Lsi03g00151 . 231 466 WRKY Transcription Factor Family AT2G38470 53.1 2.4e-62 236.9
Lsi03g00151 . 229 457 WRKY Transcription Factor Family AT4G26440 50.2 2.3e-66 250.4
Lsi02g01215 . 236 476 WRKY Transcription Factor Family AT4G26440 51.9 1.9e-65 247.3
Lsi07g01483 . 80 171 WRKY Transcription Factor Family AT3G01970 77.2 1.2e-38 156.4
Lsi03g00408 . 57 149 WRKY Transcription Factor Family AT3G01970 73.1 1.5e-38 156.0
Lsi06g01483 CCT,ECH 237 401 WRKY Transcription Factor Family AT1G62300 54.8 2.5e-38 157.1
Lsi11g01439 . 287 384 WRKY Transcription Factor Family AT1G68150 75.5 3.8e-38 156.0
Lsi01g00447 . 336 433 WRKY Transcription Factor Family AT1G68150 74.5 5.5e-37 152.1
Lsi01g00447 . 50 577 WRKY Transcription Factor Family AT4G22070 51.0 1.3e-108 390.6
Lsi11g01439 . 108 509 WRKY Transcription Factor Family AT4G04450 52.2 6.5e-90 328.2
Lsi06g01483 CCT,ECH 237 410 WRKY Transcription Factor Family AT4G04450 52.8 1.5e-38 157.5
Lsi11g01439 . 286 374 WRKY Transcription Factor Family AT1G18860 76.4 2.1e-37 154.1
Lsi05g02233 . 86 222 WRKY Transcription Factor Family AT2G44745 70.1 4.6e-52 201.4
Lsi03g01124 . 128 319 WRKY Transcription Factor Family AT2G47260 50.2 2.0e-41 166.8
Lsi07g00905 . 33 144 WRKY Transcription Factor Family AT5G41570 72.3 3.8e-44 174.9
Lsi01g00176 . 84 258 WRKY Transcription Factor Family AT4G18170 53.8 2.1e-45 179.9
Lsi11g01628 . 133 219 WRKY Transcription Factor Family AT4G18170 83.9 6.6e-39 158.3
Lsi05g01411 . 163 341 WRKY Transcription Factor Family AT5G49520 50.5 7.4e-40 161.8
Lsi11g01628 . 133 265 WRKY Transcription Factor Family AT5G49520 61.0 1.6e-37 154.1
Lsi07g00905 . 26 146 WRKY Transcription Factor Family AT1G64000 68.2 2.4e-44 175.6
Lsi01g00176 . 76 249 WRKY Transcription Factor Family AT1G29860 60.0 1.2e-49 193.7
Lsi11g01628 . 133 216 WRKY Transcription Factor Family AT1G29860 84.5 4.9e-38 155.2
Lsi02g02490 . 111 279 WRKY Transcription Factor Family AT1G29860 51.4 1.1e-37 154.1
Lsi07g01483 . 77 173 WRKY Transcription Factor Family AT5G13080 81.4 1.9e-41 165.6
Lsi03g00408 . 48 150 WRKY Transcription Factor Family AT5G13080 73.8 1.0e-39 159.8
Lsi07g00019 . 122 247 WRKY Transcription Factor Family AT5G13080 62.7 4.3e-38 154.5
Lsi04g02198 . 1 317 WRKY Transcription Factor Family AT4G31550 58.2 1.5e-84 309.7
Lsi06g01220 . 1 224 WRKY Transcription Factor Family AT4G31550 50.9 1.3e-51 200.3
Lsi04g02198 . 1 373 WRKY Transcription Factor Family AT2G24570 58.2 4.8e-106 381.3
Lsi02g02233 . 199 343 WRKY Transcription Factor Family AT2G24570 53.8 1.3e-39 160.6
Lsi05g00976 . 1 334 WRKY Transcription Factor Family AT2G30590 51.4 4.4e-82 302.0
Lsi02g02233 . 2 341 WRKY Transcription Factor Family AT2G30590 53.0 3.1e-80 295.8
Lsi04g01528 . 213 372 WRKY Transcription Factor Family AT2G30590 59.3 2.3e-46 183.3
Lsi01g00960 . 124 291 WRKY Transcription Factor Family AT2G30590 57.3 9.6e-45 177.9
Lsi10g00187 . 157 282 WRKY Transcription Factor Family AT2G30590 68.2 6.2e-44 175.3
Lsi06g01220 . 120 262 WRKY Transcription Factor Family AT2G30590 55.8 1.1e-40 164.5
Lsi05g00976 . 1 334 WRKY Transcription Factor Family AT5G28650 51.1 5.7e-78 288.1
Lsi02g02233 . 2 349 WRKY Transcription Factor Family AT5G28650 50.3 3.5e-75 278.9
Lsi01g00960 . 132 283 WRKY Transcription Factor Family AT5G28650 61.8 7.8e-43 171.4
Lsi10g00187 . 178 284 WRKY Transcription Factor Family AT5G28650 72.0 1.2e-40 164.1
Lsi05g02069 . 128 224 WRKY Transcription Factor Family AT1G30650 65.5 8.3e-37 151.8
Lsi09g00076 . 147 248 WRKY Transcription Factor Family AT5G52830 73.1 1.2e-41 167.5
Lsi05g02069 . 132 232 WRKY Transcription Factor Family AT5G52830 74.0 3.4e-41 166.0
Lsi05g02069 . 129 224 WRKY Transcription Factor Family AT2G34830 67.9 1.3e-37 154.5
Lsi02g00829 . 40 247 WRKY Transcription Factor Family AT1G29280 53.6 1.3e-53 206.8
Lsi11g01362 . 230 481 WRKY Transcription Factor Family AT2G04880 57.8 4.2e-79 292.4
Lsi04g02198 . 1 317 WRKY Transcription Factor Family AT4G31550 58.2 1.5e-84 309.7
Lsi06g01220 . 1 224 WRKY Transcription Factor Family AT4G31550 50.9 1.3e-51 200.3
Lsi05g02233 . 86 222 WRKY Transcription Factor Family AT2G44745 70.1 4.6e-52 201.4
Lsi05g02069 . 128 224 WRKY Transcription Factor Family AT1G30650 65.5 8.3e-37 151.8
Lsi04g02198 . 1 373 WRKY Transcription Factor Family AT2G24570 58.2 4.8e-106 381.3
Lsi02g02233 . 199 343 WRKY Transcription Factor Family AT2G24570 53.8 1.3e-39 160.6
Lsi06g00700 . 222 514 WRKY Transcription Factor Family AT5G56270 50.2 2.4e-70 263.8
Lsi02g01215 . 236 476 WRKY Transcription Factor Family AT5G56270 53.2 1.7e-68 257.7
Lsi02g01215 . 213 485 WRKY Transcription Factor Family AT4G26640 53.5 7.6e-69 258.5
Lsi10g01469 . 98 308 WRKY Transcription Factor Family AT4G26640 50.8 9.3e-59 224.9
Lsi05g00523 . 70 234 WRKY Transcription Factor Family AT4G26640 50.9 7.4e-40 162.2
Lsi05g00976 . 1 334 WRKY Transcription Factor Family AT2G30590 51.4 4.4e-82 302.0
Lsi02g02233 . 2 341 WRKY Transcription Factor Family AT2G30590 53.0 3.1e-80 295.8
Lsi04g01528 . 213 372 WRKY Transcription Factor Family AT2G30590 59.3 2.3e-46 183.3
Lsi01g00960 . 124 291 WRKY Transcription Factor Family AT2G30590 57.3 9.6e-45 177.9
Lsi10g00187 . 157 282 WRKY Transcription Factor Family AT2G30590 68.2 6.2e-44 175.3
Lsi06g01220 . 120 262 WRKY Transcription Factor Family AT2G30590 55.8 1.1e-40 164.5
Lsi03g01124 . 128 319 WRKY Transcription Factor Family AT2G47260 50.2 2.0e-41 166.8
Lsi07g00905 . 33 144 WRKY Transcription Factor Family AT5G41570 72.3 3.8e-44 174.9
Lsi10g01469 . 82 307 WRKY Transcription Factor Family AT2G30250 51.7 8.0e-63 238.0
Lsi02g01215 . 225 475 WRKY Transcription Factor Family AT5G07100 57.7 9.2e-69 256.9
Lsi03g02255 . 153 382 WRKY Transcription Factor Family AT5G07100 57.3 1.2e-68 256.5
Lsi10g01469 . 88 308 WRKY Transcription Factor Family AT5G07100 56.3 2.0e-63 239.2
Lsi09g00076 . 147 248 WRKY Transcription Factor Family AT5G52830 73.1 1.2e-41 167.5
Lsi05g02069 . 132 232 WRKY Transcription Factor Family AT5G52830 74.0 3.4e-41 166.0
Lsi01g00176 . 84 258 WRKY Transcription Factor Family AT4G18170 53.8 2.1e-45 179.9
Lsi11g01628 . 133 219 WRKY Transcription Factor Family AT4G18170 83.9 6.6e-39 158.3
Lsi04g00386 . 15 488 WRKY Transcription Factor Family AT2G03340 53.2 1.1e-120 430.6
Lsi03g00151 . 12 503 WRKY Transcription Factor Family AT2G03340 52.5 1.1e-117 420.6
Lsi02g01215 . 225 488 WRKY Transcription Factor Family AT2G03340 53.6 1.6e-66 250.8
Lsi10g01469 . 86 308 WRKY Transcription Factor Family AT2G03340 50.6 3.7e-60 229.6
Lsi01g00447 . 50 577 WRKY Transcription Factor Family AT4G22070 51.0 1.3e-108 390.6
Lsi02g01215 . 234 582 WRKY Transcription Factor Family AT2G38470 57.0 8.6e-97 351.3
Lsi10g01469 . 99 309 WRKY Transcription Factor Family AT2G38470 59.9 7.3e-72 268.5
Lsi07g01425 . 331 616 WRKY Transcription Factor Family AT2G38470 51.7 2.9e-68 256.5
Lsi04g00386 . 192 443 WRKY Transcription Factor Family AT2G38470 53.7 1.0e-65 248.1
Lsi03g00151 . 231 466 WRKY Transcription Factor Family AT2G38470 53.1 2.4e-62 236.9
Lsi03g00151 . 229 457 WRKY Transcription Factor Family AT4G26440 50.2 2.3e-66 250.4
Lsi02g01215 . 236 476 WRKY Transcription Factor Family AT4G26440 51.9 1.9e-65 247.3
Lsi05g02069 . 129 224 WRKY Transcription Factor Family AT2G34830 67.9 1.3e-37 154.5
Lsi04g00386 . 105 488 WRKY Transcription Factor Family AT1G13960 57.3 1.9e-98 356.3
Lsi02g01215 . 226 494 WRKY Transcription Factor Family AT1G13960 52.1 4.8e-70 261.9
Lsi03g02255 . 161 395 WRKY Transcription Factor Family AT1G13960 52.0 1.0e-64 244.2
Lsi11g01439 . 108 509 WRKY Transcription Factor Family AT4G04450 52.2 6.5e-90 328.2
Lsi06g01483 CCT,ECH 237 410 WRKY Transcription Factor Family AT4G04450 52.8 1.5e-38 157.5
Lsi07g01483 . 80 171 WRKY Transcription Factor Family AT3G01970 77.2 1.2e-38 156.4
Lsi03g00408 . 57 149 WRKY Transcription Factor Family AT3G01970 73.1 1.5e-38 156.0
Lsi05g01411 . 163 341 WRKY Transcription Factor Family AT5G49520 50.5 7.4e-40 161.8
Lsi11g01628 . 133 265 WRKY Transcription Factor Family AT5G49520 61.0 1.6e-37 154.1
Lsi07g00905 . 26 146 WRKY Transcription Factor Family AT1G64000 68.2 2.4e-44 175.6
Lsi06g01483 CCT,ECH 237 401 WRKY Transcription Factor Family AT1G62300 54.8 2.5e-38 157.1
Lsi11g01439 . 286 374 WRKY Transcription Factor Family AT1G18860 76.4 2.1e-37 154.1
Lsi02g00829 . 40 247 WRKY Transcription Factor Family AT1G29280 53.6 1.3e-53 206.8
Lsi01g00176 . 76 249 WRKY Transcription Factor Family AT1G29860 60.0 1.2e-49 193.7
Lsi11g01628 . 133 216 WRKY Transcription Factor Family AT1G29860 84.5 4.9e-38 155.2
Lsi02g02490 . 111 279 WRKY Transcription Factor Family AT1G29860 51.4 1.1e-37 154.1
Lsi05g00976 . 1 334 WRKY Transcription Factor Family AT5G28650 51.1 5.7e-78 288.1
Lsi02g02233 . 2 349 WRKY Transcription Factor Family AT5G28650 50.3 3.5e-75 278.9
Lsi01g00960 . 132 283 WRKY Transcription Factor Family AT5G28650 61.8 7.8e-43 171.4
Lsi10g00187 . 178 284 WRKY Transcription Factor Family AT5G28650 72.0 1.2e-40 164.1
Lsi07g01483 . 77 173 WRKY Transcription Factor Family AT5G13080 81.4 1.9e-41 165.6
Lsi03g00408 . 48 150 WRKY Transcription Factor Family AT5G13080 73.8 1.0e-39 159.8
Lsi07g00019 . 122 247 WRKY Transcription Factor Family AT5G13080 62.7 4.3e-38 154.5
Lsi11g01439 . 287 384 WRKY Transcription Factor Family AT1G68150 75.5 3.8e-38 156.0
Lsi01g00447 . 336 433 WRKY Transcription Factor Family AT1G68150 74.5 5.5e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002003 3 1 2 1 3 2 4 2 2 1 2 2 5 2 2 4 2 2 4 2 1 2 2 2 2 1 2 3 2 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25373 PF03106 WRKY 1.30E-24 CL0274 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01411 Lsi_Chr05 FPKM 0.0 0.0 0.0 0.0 0.655704 0.721276 0.949444 0.591428 0.0 0.0