Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01411 ATGGAAAAGAAATTTGAAGACTCAATGATGGGGTTTGATAATTCTGCCGGATTTTACTCTCCGGCGGTGTTTTTCGATGAGTTTCCGGCGTCTAATTTTGATTCCTTTTCCAGTATTTTCGACATGCCATGTGATGACCATAAAGCTGCTGCTGCTTCTTGTTCTTCTAATTCCTTTGACTTATTTAGTAGTGGAATTGAAATCCATGATTTTCACAATATTATTAATAATAATAATAATCCTTCTTCTTCTTCTTCTAATTTTTTCGATTTGCTTTCTACGGCGGCTCCGCCTCTTTCCTCACCGGCCTCCACCGTGCCGGAGTCCTCTGAGGTTCTTAATGCTCCACCCACTCCTAATTCTTCCTCTGTTTCTTCCTCCTCCAATGAAGCTTCAGCTGCCATTGAAGAAGTTGACAAGATCAACAACAACACTGAGAAGCCTTCTTCTTCTAAATTGTTGAAGCCAAAAAAGAAGAACCAAAAGAAGCAAAGAGAACCCAGATTTGCTTTCATGACAAAGAGTGATATTGATCATCTCGACGACGGTTACCGGTGGCGAAAGTACGGTCAAAAAGCCGTGAAGAATAGTCCTTACCCCAGAAGCTATTATCGTTGTACAACAGCCAGGTGCGGTGTGAAGAAGAGAGTAGAACGATCGTCCGGTGACTATTCGATAGTCGTTACGACGTACGAAGGTCAACACACTCACCAAAGTCCGGTAATGCCACGAGGGAGTATCAGAGTTTTACCGGAATCCTCCAACAACGGTCTCATCGCCGATCACGACACCACTACCACCGGACTTTTATTCCAACACAACACTCCCCAACCCTTCGTGTATAGCTCTCCGCCACCGCCATTTCTAACAATCAACTCGTCGGTGGCAGCCGCGAGTCCCCGTCATCCTCCTCCTCCTCCTACTTCCTTCCCATCACCGTTGCCACCACCGTCGCCTCAAGCTTCCTTAGTCCGAGACCATGGGCTTTTGCAGGACTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAGCAAAATGGATGA 1047 45.75 MEKKFEDSMMGFDNSAGFYSPAVFFDEFPASNFDSFSSIFDMPCDDHKAAAASCSSNSFDLFSSGIEIHDFHNIINNNNNPSSSSSNFFDLLSTAAPPLSSPASTVPESSEVLNAPPTPNSSSVSSSSNEASAAIEEVDKINNNTEKPSSSKLLKPKKKNQKKQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTARCGVKKRVERSSGDYSIVVTTYEGQHTHQSPVMPRGSIRVLPESSNNGLIADHDTTTTGLLFQHNTPQPFVYSSPPPPFLTINSSVAAASPRHPPPPPTSFPSPLPPPSPQASLVRDHGLLQDLVPLQMRKEPKDEQNG 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22051870 22053690 - Lsi05G014110.1 Lsi05g01411 663903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01411 348 MobiDBLite consensus disorder prediction 100 133 - -
Lsi05g01411 348 SUPERFAMILY WRKY DNA-binding domain 172 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi05g01411 348 Pfam WRKY DNA -binding domain 181 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g01411 348 ProSiteProfiles WRKY domain profile. 175 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g01411 348 MobiDBLite consensus disorder prediction 100 169 - -
Lsi05g01411 348 MobiDBLite consensus disorder prediction 299 320 - -
Lsi05g01411 348 Gene3D WRKY domain 165 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi05g01411 348 MobiDBLite consensus disorder prediction 296 323 - -
Lsi05g01411 348 SMART WRKY_cls 180 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi05g01411 348 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 57 335 - -
Lsi05g01411 348 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 57 335 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02490 Lsi-Chr2:31363690 Lsi05g01411 Lsi-Chr5:22051870 9.80E-43 dispersed
Lsi03g01124 Lsi-Chr3:21462995 Lsi05g01411 Lsi-Chr5:22051870 6.14E-46 dispersed
Lsi05g01411 Lsi-Chr5:22051870 Lsi08g00885 Lsi-Chr8:17234479 2.12E-45 dispersed
Lsi05g01411 Lsi-Chr5:22051870 Lsi11g01628 Lsi-Chr11:24630520 5.84E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25373 PF03106 WRKY 1.30E-24 CL0274 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01411 - - bhj:120088001 493.426