Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01413 ATGGCGTCGTCTCTGATTCTGAATCCTGTGGCAAGTTCTGAGCGATCGCGTGATTCATCCAGAAAGAAGAAGAAGAAGAAAGCGGCGAGGGAAGATGATCGTCAAGATCAAGATCACATCAAATGGAAATCACAAGCTCAGCATCAAGTTTTCTCATCGAAGCTGTTGCGCGCCTTGAGTCAGGTCAGGATCAGTTCACCTGAGTCGACACCAAACGAAACGCGGCGCCGTGGCCGAGCGGTGCGGGAGGCGTCGGATACGGTTCTAGCCATGACGGCTAAAGGAAGAAGTAGGTGGAGCAGAGCAATCTTGACGAACCGTCTCAAACTCAAGTTTCGTAATAAGCACAATCGGCAGAAGGCGCGTGTGACCGGAAACAGCCGTACGAAGAAGCCGAGTGTTAGCGTTTTGCGGTTGAGAGGGAAGGGATTACCAACTGTACAGAGAAAAGTCCGGACTCTCAGCCGGCTAGTTCCCGGCTGCCGGAAACAACCGCTGCCGGTGATTCTGGATGAAGTAACCGATTACATTCCAGCACTGGAGATGCAGATCCGAGTCATGAGCGCCATTTTCAACTTGGTTTCAAGCTCTTCTTCATCTTCTTCTGGTTTCGATTCTGCTACCTGA 627 51.2 MASSLILNPVASSERSRDSSRKKKKKKAAREDDRQDQDHIKWKSQAQHQVFSSKLLRALSQVRISSPESTPNETRRRGRAVREASDTVLAMTAKGRSRWSRAILTNRLKLKFRNKHNRQKARVTGNSRTKKPSVSVLRLRGKGLPTVQRKVRTLSRLVPGCRKQPLPVILDEVTDYIPALEMQIRVMSAIFNLVSSSSSSSSGFDSAT 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22100118 22100744 - Lsi05G014130.1 Lsi05g01413 663905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01413 208 MobiDBLite consensus disorder prediction 25 43 - -
Lsi05g01413 208 CDD bHLH_AtIBH1_like 136 190 IPR044549 GO:0006355
Lsi05g01413 208 PANTHER TRANSCRIPTION FACTOR BHLH148-LIKE ISOFORM X1 7 207 - -
Lsi05g01413 208 MobiDBLite consensus disorder prediction 1 47 - -
Lsi05g01413 208 MobiDBLite consensus disorder prediction 62 81 - -
Lsi05g01413 208 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 7 207 IPR044660 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01413 Lsi-Chr5:22100118 Lsi06g00052 Lsi-Chr6:402447 1.14E-39 dispersed
Lsi05g01413 Lsi-Chr5:22100118 Lsi09g01503 Lsi-Chr9:23057029 1.41E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01413 - - csv:105434845 317.39