Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01417 ATGGATATGATTTTTGTTAACAATAACACTGTTTTGGGTATCCTATTTTTTACCCTATTTACCTTGTTTGGAATTTGCTTCTCTAAAGCTTTTACAGCTAATTTTGTGTTTGGGGATTCATTGGTGGAAGTTGGAAACAACAACTACATTCCATCACTCTCCCGAGCCAACTATGTGCCAAACGGCATCGATTTCGGAAGGCCAACTGGTCAGGAGCTTGGGTTCAAGACATTCACTCCCCCGTACTTGGCGCCTTCCACGACCGGAGCGGTGATTCTTCAAGGCGTCAACTATGCTTCTGGTTCAGCTGGAATCTTAAACAACACAGGAAAAGTCTTTATTGCTCGAATCAACATGGATGCACAAATCGATAACTTTGCCAATACCAGACAAGATATCATCTCCATGATTGGCCTTCCTGCTGCCATAGATTTGCTTAGAACTTCCATTTTCTCCATAACCATTGGCTCAAATGACTTCATAAATAACTACTTTACACCAGTTCTCTCAGATTCAGGACACCGGTTGATTCCTCCAGAGTTGTTTGTTGCCTCCATGATTTCAAGATACAGACTCCAACTCACAAGACTCTACAACCTAGGAGCCAGAAAGATCATAGTGGTGAACGTCGGACCAATCGGATGCATTCCATATCAGAGAGATTCAAATCCTTCATTAGGAAATAACTGTGCAAATTCCCCTAACCTAATGGCTCAGTTATTCAACAATCAGTTGAGAGGTCTACTCACAGAGCTCGGAGCTCGATTTCAGGATTCGAATTTCCTTTACGCAGATGCATTTCGCATCGTTCAAGATATAGTTCAGAATCACGCATCATACGCTTCGTTCGCTGCATTTGAATATGGTTTGAGAATGCCGACTCGGCGTGCTGCCACATCGCCGGGAGCTGCGAACTCCATCATCGCCGGGCGGCTCTTGAACGGCGACGCCATTGATATTTGGCCCATCAGTATTCGAGAACTTGAACTTCCGTTGGAGTCGGCACCTCAAGCTTTCAGGAGAGATCCAGGACACCCTCATTGGCATCACGGAGCCTTCCATACCGTCCGAGATAGTGTCCGAAACGATGTTCGTCGGATGCTTCATTCACGAGCTGAGGTTCCCTTTCAGGTTCCACTTGAAGTGAACATCGTCCTTATTGGTTTCAATAATGATGGAGCCTACCGGTACACAGTAGATTCACACAAGCTAGAAGAGTTTCTGAGAGCCAGCTTCCCATCTCACAGGCCATCCTGCCTTGAGACTGGCGAGCCCATTGATATAGAGCATCATATTGTATATAATGCATTTTCTGTAGGTCAGGCTGAATTGATAGCTCTTGAGAAAGCATTGAAGGAGACCATGATTCCAGCTGGAACCGCAAGAGAGACTGATTTTGGAAGGGAGGTGCCTTTGTTTGAGGTTGAAGCAACAACAGTTGAACCTGTGTTTCAGAAGTTATATTCCTATATATTTGACACGGCTGATGAGGGATACTCTGCTGCTGAGAGGGATAGACTTATGCCAATTGCCATATTTATTGTCAACTTCGATAAGGTCAGAATGGACCCCAGAAATAAGGAGATCGATCTCGATAGTTTAATGTATGGTAAACTTGCCCAGCTAAATGATGAAGATATGAAAAAACAAGAAGGTGATTACATTTATCGTTATCGATACGAAGGAGGAGGAGCAACTCAAGTTTGGCTGGGCTCTGGCAGATATGTTGTGATTGACCTCTCAGCGGGCCCATGCACATATGGAAAAATTGAAACTGAAGAGGGAAGCGTCAGTTCTAGAACTCTACCACGATTGAGGAATGTGCTATTTCCAAGAGGATTTGGTGCAGCTACTGATCATTCAACCCATGATAACTTTCTGGGGGAACTTGCTGCCCTGGTATCAACCACCATTGAACATGTCATAGCCCCGGATGTCAGGTTTGAAACCGTTGATATGACAACAAGATTGCTTATACCGATAATCGTCTTGCAAAATCACAATCGATACAATATTATGGAGAAAGGCCATAATTACAGTATAAATGTTGAAGCAATTGAAGCAGAGGTTAAGAAGATGATTCATGTTGGGCAAGAAGCAGTGATTATTGGTGGTGCACATTTATTACATCGTCATGAAAAGTTGGCCATAGCTGTTTCAAAAGCAATGCGAAGCCATTCCCTACAGGAAACGAAGAATGATGGTCGTTTTCATGTCCATACCAAGGTGTATTTGGATGGTGCTATCCTTAGAGAAGAAATGGAAAGGTCCGCTGATGTGCTTGCTGCAGGTTTGCTTGAGGTGGCTGACCCATCTTTATCTGATAAATTTTTTCTTCGCCAGCACTGGACGGATGAAACTGATGTTTCAAATGATTCAGTACTGAAACATAAGCCTCTTTGGGCCACATATCAATCAAAAATTGGCAAGAAGATGAAGAAAACTGAAAAAAAGCAGGGGGATTTGCACCGAACTTATGGAACTAGGGTACTTCCAGTTTTTGTCCTATCATTGGCTGATGTTGATTCAAAACTCACGATGGAGGATGAAAGCCTGGTTTATGCAAGCAAAGATGTTGTAATCGTACTCGAGCATCAAAATGAGAAGATACCTCTGAGTTATGTTTCTGAAACACATAGAAGACATGCTGATCCATCACAGGCACAACGTCATATATTGGCAGGGCTTGCTTCAGCTGTTGGTGGTTTGACTGCACCTTATGAGAGGGCTTCTCATGTTCATGAGAGGGCAATTGTAAATTGGCTCTGGGCAGCTGGTTGTCATCCATTTGGCCCGTTCTCGAACACGTCCCAAGTCAGTCAAATGCTTCAAGATGTTGCATTGAGGAACATCATATATGCACGTGTAGACTCAGCTCTTCACCGAATCCGAGATACATCAGAGACTGTCCAAACCTTTGCAGCAGAACATCTGAAAACTCCACTTGGTGAACCTGTGAAAGGCAAGAAGAACAAGACAACTACCGAGTTACGGTTGGAGAAGTTCTATAAAAAAACCACCAACTTGCCTGAACCTTTCCCCCACGAATTGGTTGAGCGACTTGAAAAATACTTGGATAACCTTGAGAAACAGCTCGTGGATCTCTCGTCGCTATTATATGACCATCATTTACAAGATGCACATTTGAATAGTTCTGAAATTTTCCAGAGCTCCATTTTCACCCAGCAGTATGTCGATTTTGTACTGAGCGAAGAGAGGGAGAAGATGAGATGCTGCAGCATTGAGTACAAATATCCAGTGCAGTCTTCTCAAAATTACATCTATGGAGGAATTCTTCTAGCTGGATTTGTAGTTTACTTTCTTGTCATTTTCTTTTCATCACCAGTGCGCTAA 3354 43.29 MDMIFVNNNTVLGILFFTLFTLFGICFSKAFTANFVFGDSLVEVGNNNYIPSLSRANYVPNGIDFGRPTGQELGFKTFTPPYLAPSTTGAVILQGVNYASGSAGILNNTGKVFIARINMDAQIDNFANTRQDIISMIGLPAAIDLLRTSIFSITIGSNDFINNYFTPVLSDSGHRLIPPELFVASMISRYRLQLTRLYNLGARKIIVVNVGPIGCIPYQRDSNPSLGNNCANSPNLMAQLFNNQLRGLLTELGARFQDSNFLYADAFRIVQDIVQNHASYASFAAFEYGLRMPTRRAATSPGAANSIIAGRLLNGDAIDIWPISIRELELPLESAPQAFRRDPGHPHWHHGAFHTVRDSVRNDVRRMLHSRAEVPFQVPLEVNIVLIGFNNDGAYRYTVDSHKLEEFLRASFPSHRPSCLETGEPIDIEHHIVYNAFSVGQAELIALEKALKETMIPAGTARETDFGREVPLFEVEATTVEPVFQKLYSYIFDTADEGYSAAERDRLMPIAIFIVNFDKVRMDPRNKEIDLDSLMYGKLAQLNDEDMKKQEGDYIYRYRYEGGGATQVWLGSGRYVVIDLSAGPCTYGKIETEEGSVSSRTLPRLRNVLFPRGFGAATDHSTHDNFLGELAALVSTTIEHVIAPDVRFETVDMTTRLLIPIIVLQNHNRYNIMEKGHNYSINVEAIEAEVKKMIHVGQEAVIIGGAHLLHRHEKLAIAVSKAMRSHSLQETKNDGRFHVHTKVYLDGAILREEMERSADVLAAGLLEVADPSLSDKFFLRQHWTDETDVSNDSVLKHKPLWATYQSKIGKKMKKTEKKQGDLHRTYGTRVLPVFVLSLADVDSKLTMEDESLVYASKDVVIVLEHQNEKIPLSYVSETHRRHADPSQAQRHILAGLASAVGGLTAPYERASHVHERAIVNWLWAAGCHPFGPFSNTSQVSQMLQDVALRNIIYARVDSALHRIRDTSETVQTFAAEHLKTPLGEPVKGKKNKTTTELRLEKFYKKTTNLPEPFPHELVERLEKYLDNLEKQLVDLSSLLYDHHLQDAHLNSSEIFQSSIFTQQYVDFVLSEEREKMRCCSIEYKYPVQSSQNYIYGGILLAGFVVYFLVIFFSSPVR 1117
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22127433 22139041 - Lsi05G014170.1 Lsi05g01417 663909

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01417 1117 Pfam GDSL-like Lipase/Acylhydrolase 35 275 IPR001087 GO:0016788
Lsi05g01417 1117 PANTHER BNAC01G21930D PROTEIN 333 1115 - -
Lsi05g01417 1117 PANTHER TRANSMEMBRANE PROTEIN-RELATED 333 1115 - -
Lsi05g01417 1117 CDD SGNH_plant_lipase_like 32 316 IPR035669 -
Lsi05g01417 1117 Coils Coil 1018 1038 - -
Lsi05g01417 1117 Gene3D SGNH hydrolase 27 302 IPR036514 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01417 - - - csv:101212442 1513.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01417 Lsi-Chr5:22127433 Lsi02g00538 Lsi-Chr2:4668744 5.18E-46 dispersed
Lsi05g01417 Lsi-Chr5:22127433 Lsi01g00204 Lsi-Chr1:1916431 3.20E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g54 . . . . . . . . . . Cma06g01565 Cma14g01586 Car06g01330 Car14g01396 Sed02g1134 Cpe08g00148 Cpe03g01323 Bhi01g01095 Tan10g1082 Cmetu06g1740 . . . Lcy11g1333 . . . . . . . . . . . Lsi05g01417 . . Cme06g00794 . Blo07g00138 Bda11g00497 . . . . Bma06g01462 . Cmo06g01561 Cmo14g01616 . . . . . . . . . . . . . Cla05g00711 Cam05g0777 Cec05g0785 Cco05g0779 Clacu05g0768 Cmu05g0734 Cre05g0808 . Csa03g01523 Chy06g00759 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006293 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 3 2 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01417 Lsi_Chr05 FPKM 1.676617 2.552415 11.87801 16.851505 4.110194 1.596838 3.432565 5.589223 5.503407 6.816299