Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01418 ATGGCTGATTCACCCTCGAATTCCCTGGTCAAACCGATTCACATCGCATTCGCGATCGCTTTTGCTCTGTTAATCTCATCTCCGATCGGTTCTTATGCCTTTACTGCACAAAATGTGATCGATTCGCCGTTGTTGACGAAGAAGATCGGTACAAATCGAACGATCAAGGTCGATATTAATGGAAATGGCGAATTCGCATCCATTCAAGCTGCAGTCGATTCTGTTCCGGAGGGGAATTCGCAGTGGATGATCATCCATGTTAGGAAAGGAATATACAGAGAGAAGGTTCATATTCCGTCGAGTAAGCCGTACATCTTCTTGAGAGGGAACGGAAAAGGAAGGACGTCCATCGTTTGGTCACAGAGCTCTAATGATAACATTGAATCTGCTACTTTTAAAGTTGAAGCTCAACATTTCATTGCTTTTGGAATTAGCTTCAAGAATGAGGCTCCGACTGGTGTGGCTTACACATCGCAAAATCAGTCGGTAGCGGCATTCGTTGCCGCAGATAAAGTTGCATTTTACCACTGTGGATTCTATAGCACTCACAACACACTGTTCGATTATAAAGGCAGACATTATTATGACAGTTGCTACATTCAAGGCTCAATTGATTTCATCTTTGGCCGCGGCAGATCCGTCTTCCATAATTGTGAGATGTTTGTGATTGATGACAAGAGATTGAAGATCCGTGGTTCAATCACAGCTCAAAACAGAAAGAGTGCAAATGAGAACAGTGGGTTTGTTTTCATCAGAGGAAAGGTTTACGGAATTGGCGGTGTGTATTTGGGCAGAGCAAAAGGTGCATGTTCCAGAGTCATTTTTGCTAAAACTTACCTCTCCATGACTGTTCTTCCTGCTGAATATGATTGTCATGGACCAGGAGCAGAATCAGGACACCGTGCCCCATGGACTAAACAGCTAACTAAAGAGGAAGCTGCCCCGTTCATGGAAATCGGTTTTATTGATGGCACCGATTGGCTTCCTGCGTGGCTATAA 999 44.04 MADSPSNSLVKPIHIAFAIAFALLISSPIGSYAFTAQNVIDSPLLTKKIGTNRTIKVDINGNGEFASIQAAVDSVPEGNSQWMIIHVRKGIYREKVHIPSSKPYIFLRGNGKGRTSIVWSQSSNDNIESATFKVEAQHFIAFGISFKNEAPTGVAYTSQNQSVAAFVAADKVAFYHCGFYSTHNTLFDYKGRHYYDSCYIQGSIDFIFGRGRSVFHNCEMFVIDDKRLKIRGSITAQNRKSANENSGFVFIRGKVYGIGGVYLGRAKGACSRVIFAKTYLSMTVLPAEYDCHGPGAESGHRAPWTKQLTKEEAAPFMEIGFIDGTDWLPAWL 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22144237 22147702 + Lsi05G014180.1 Lsi05g01418 663910

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01418 332 Pfam Pectinesterase 56 286 IPR000070 GO:0030599|GO:0042545
Lsi05g01418 332 Gene3D - 49 331 IPR012334 -
Lsi05g01418 332 SUPERFAMILY Pectin lyase-like 51 330 IPR011050 -
Lsi05g01418 332 PANTHER PECTINESTERASE 67-RELATED 13 331 - -
Lsi05g01418 332 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 13 331 - -
Lsi05g01418 332 ProSitePatterns Pectinesterase signature 2. 200 209 IPR033131 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01418 - - - csv:101215809 603.594
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01418 Lsi-Chr5:22144237 Lsi06g00224 Lsi-Chr6:2582297 6.70E-72 dispersed
Lsi10g01116 Lsi-Chr10:15418419 Lsi05g01418 Lsi-Chr5:22144237 5.55E-48 dispersed
Lsi05g01418 Lsi-Chr5:22144237 Lsi03g01970 Lsi-Chr3:31110745 3.75E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g60 . . . . . . . . . . . Cma14g01588 . Car14g01398 Sed02g1135 . Cpe03g01325 Bhi01g01093 Tan10g1080 Cmetu06g1917 . Hepe05g1373 . Lcy11g1335 . . . . . . . . . . Cone4ag0104 Lsi05g01418 . . Cme06g00792 . Blo07g00142 . . . Bpe13g00699 . . . . Cmo14g01618 . . . . . . . . . . . . . Cla05g00709 Cam05g0776 Cec05g0784 Cco05g0777 Clacu05g0766 Cmu05g0732 Cre05g0806 . Csa03g01521 Chy06g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012037 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01418 Lsi_Chr05 FPKM 61.481911 63.839706 92.446556 90.604599 96.553238 100.303963 90.044754 92.198608 97.850609 85.813675