Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01420 ATGGTTTCCAGTAATCGAGCGACGCATTCGCATCAACAACAAGCACAGTCTTCGAACACGAATACAAGCAATTTGCGATCTCATCGTACAGATTCCATCAGCAAAGCTATAGCGCAGTACACAGTTGATGCTCGTCTTCACGCGGTGTTTGAGCAGTCAGGTGAGTCTGGAAAATCTTTTGACTACTCACAATCTATAAGAACTTCGACTCAATCTGTGCCGGAGCAGCAAATTACTGCTTATTTGTCGAAGATTCAAAGGGGTGGCCATATCCAGCCCTTTGGATGTATGATAGCTATAGAAGAGGCTAGTTTTCGGGTTATTGCATACAGTGAGAACGCTAGGGAATTGCTCGGTCTAACGCCTCAATCAGTGCCGAGTCTTGAAAAACCTGAGATCCTTACAATTGGGACTGATGTACGGAACTTGTTCACTTCCAACAGTGCAATTCTGCTAGAGAAAGCATTTGGGGCTCGAGAAATCACTTTGTTGAACCCGGTTTGGATTCATTCCAAGAATTCTGGGAAACCCTTTTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGAGCAGTGCAATCGCAGAAGCTTGCGGTACGTGCAATTTCTCAGTTACAAGCACTTCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGAGTTATGGTGTATAAGTTTCATGAGGATGAGCATGGTGAGGTTGTGGCTGAAAGCAAGAGGCCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACCGATATCCCTCAGGCATCAAGGTTTTTGTTTAAGCAAAACCGGGTTAGGATGATTGTTGATTGCCATGCCTCTCCAGTTCGTGTAATTCAGGATGCAGGGCTTATGCAACATCTCTGCTTGGTGGGTTCAACTCTTCGTGCTCCCCATGGCTGCCATGCCCAGTATATGGCCAATATGGGCTCCATTGCTTCGTTAGCAATGGCAGTTGTTATCAATGGTAATGATGATGAAGCTATCGGTGGGCGAAATTCAACGAGGCTTTGGGGTTTGGTTGTATGCCACCATACCTCTGCTCGGTGTATTCCGTTCCCGCTCCGGTATGCGTGTGAGTTTCTAATGCAAGCATTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCTTCACAGATGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAGCTGGCATTGTTACGCAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTTTACTATCAAGGGAAATATTACCCTCTGGGTGTGACGCCAACTGAGGCCCAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGGCGATGCTGGATATCCAGGGGCAGCCTTGCTGGGTGATGCAGTTTGTGGTATGGCTGTTGCTTACATCACAAAAAAGGATTTTCTATTTTGGTTCCGATCTCATACAGCAAAAGAGATCAAGTGGGGTGGTGCAAAGCATCACCCAGAGGATAAGGATGATGGTCAAAGAATGCATCCGCGTTCTTCATTCAAGGCATTCTTGGAAGTGGTAAAATCCCGTAGTTTACCATGGGAGAATGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTACGAGATTCATTTAAGGATGATGTGGCAATCAATTCAAAGGCAGTTGTTCACCCTCAACTAGGGGATCTTGACTTGCAAGGGATTGATGAGCTCAGCTCGGTTGCAAGAGAAATGGTCAGGTTGATTGAGACTGCAACTGCTCCTATCTTTGCTGTAGATGCTGATGGTCGTATCAATGGATGGAATGCTAAGATTGCTGAGTTGAGTGGGCTTTCTGTTGAGGAAGCTATGGGGAAATCCTTAGTTCGTGATCTTGTGTACAAAGAATCTGAAGAAACAGTTGACAAACTTGTTTCCCGGGCTTTAAAAGGTGAAGAAGATAAAAATGTAGAGATAAAAATGAGGACATTTGGGCCAGAAGATCAAAGGACGCCAATTTTTGTTGTTGTAAATGCTTGCTCTAGCAGGGACTACACTGATAATATAGTTGGCGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTGTTAGCATACAAGGTGATTATAAAGCAATTGTTCATAGTCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCGGAATGGAATACTGCCATGGAAAAGCTCACTGGATGGTCCAGGGAGGAGATAATTGGAAAAATGCTAGTAGGAGATGTTTTTGGAAGTTGTTGTCGACTTAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCCTGCACGGTGCAATGGGAGGGCAGGACAATGAAAAATACCCGTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAAGCTCTCTTAACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCTAGTCCTGAATTGCAGCAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTTGCAAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAGCAGTTCCTTGAGACCAGTGTTGCTTGTGAAAAGCAGATGCTAAAAATTATAGAGGATATGGATTTGGAATGTATTGATGATGGGACGATGGAGCTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTTAGTCAAGTGATGATACTACTCAGAGAAAGAAACTTACAACTGATTCGTGATATACCAGAAGAAGTAAAGACTATGGCTGTCTATGGCGATCAAGTGAGGATTCAACAGGTCTTAGCTGATTTCTTGTTGAATATGGTCCGTTACGCGCCCTCTCCAGAAGGCTGGGTAGAAATACGTGTCTGTCCATTCCTGAAGCAAAACCCGGATGGACTTACTCTTGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCTCCTGAGTTAGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGGTTAGGCTTGAGCATGTGCAGAAAGATTTTGAAGCTCATGAATGGTGAAGTCCAATACATCAGAGAGTCTGAAAGATGTTATTTCTTGATTACTCTTGAACTCCCCTTGACAGAGAGAGGCTTAAACGATGTCGGTTAG 3396 43.67 MVSSNRATHSHQQQAQSSNTNTSNLRSHRTDSISKAIAQYTVDARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIEEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVRVIQDAGLMQHLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGNDDEAIGGRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPAGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVEWLLAFHGDSTGLSTDSLGDAGYPGAALLGDAVCGMAVAYITKKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDDVAINSKAVVHPQLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGRINGWNAKIAELSGLSVEEAMGKSLVRDLVYKESEETVDKLVSRALKGEEDKNVEIKMRTFGPEDQRTPIFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFVSIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSREEIIGKMLVGDVFGSCCRLKGPDALTKFMIVLHGAMGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEVKTMAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIRVCPFLKQNPDGLTLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLNDVG 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22155641 22161365 - Lsi05G014200.1 Lsi05g01420 663912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01420 1131 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 972 1121 IPR036890 -
Lsi05g01420 1131 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Lsi05g01420 1131 Pfam PAS fold 756 875 IPR013767 GO:0006355
Lsi05g01420 1131 Pfam PAS fold 625 740 IPR013767 GO:0006355
Lsi05g01420 1131 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Lsi05g01420 1131 SMART gaf_1 229 417 IPR003018 GO:0005515
Lsi05g01420 1131 PRINTS Phytochrome signature 718 735 IPR001294 GO:0006355|GO:0009584
Lsi05g01420 1131 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355|GO:0009584
Lsi05g01420 1131 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355|GO:0009584
Lsi05g01420 1131 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355|GO:0009584
Lsi05g01420 1131 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355|GO:0009584
Lsi05g01420 1131 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355|GO:0009584
Lsi05g01420 1131 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Lsi05g01420 1131 PRINTS Phytochrome signature 738 758 IPR001294 GO:0006355|GO:0009584
Lsi05g01420 1131 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Lsi05g01420 1131 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Lsi05g01420 1131 Gene3D - 878 959 - -
Lsi05g01420 1131 CDD HisKA 897 953 IPR003661 GO:0000155|GO:0007165
Lsi05g01420 1131 Gene3D PAS domain 769 877 - -
Lsi05g01420 1131 Pfam GAF domain 229 407 IPR003018 GO:0005515
Lsi05g01420 1131 Gene3D - 210 568 IPR029016 -
Lsi05g01420 1131 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 885 953 IPR036097 GO:0000155|GO:0007165
Lsi05g01420 1131 TIGRFAM sensory_box: PAS domain S-box protein 629 743 IPR000014 -
Lsi05g01420 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 736 IPR035965 -
Lsi05g01420 1131 CDD PAS 633 740 IPR000014 -
Lsi05g01420 1131 ProSiteProfiles PAS repeat profile. 622 693 IPR000014 -
Lsi05g01420 1131 CDD HATPase_Phy-like 1008 1120 IPR044767 -
Lsi05g01420 1131 Gene3D - 960 1126 IPR036890 -
Lsi05g01420 1131 Gene3D - 412 585 IPR043150 -
Lsi05g01420 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 199 IPR035965 -
Lsi05g01420 1131 SMART HisKA_10 897 961 IPR003661 GO:0000155|GO:0007165
Lsi05g01420 1131 SUPERFAMILY GAF domain-like 415 592 - -
Lsi05g01420 1131 SUPERFAMILY GAF domain-like 209 404 - -
Lsi05g01420 1131 Gene3D PAS domain 84 332 - -
Lsi05g01420 1131 ProSiteProfiles Histidine kinase domain profile. 904 1124 IPR005467 -
Lsi05g01420 1131 SMART HKATPase_4 1009 1124 IPR003594 -
Lsi05g01420 1131 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1009 1121 IPR003594 -
Lsi05g01420 1131 Gene3D PAS domain 620 744 - -
Lsi05g01420 1131 Pfam His Kinase A (phospho-acceptor) domain 901 961 IPR003661 GO:0000155|GO:0007165
Lsi05g01420 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 770 874 IPR035965 -
Lsi05g01420 1131 PIRSF Phytochrome_conventional 12 1129 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lsi05g01420 1131 CDD PAS 767 875 IPR000014 -
Lsi05g01420 1131 SMART pas_2 624 691 IPR000014 -
Lsi05g01420 1131 SMART pas_2 755 825 IPR000014 -
Lsi05g01420 1131 Pfam Phytochrome region 420 593 IPR013515 GO:0006355|GO:0009584
Lsi05g01420 1131 PANTHER TWO-COMPONENT HISTIDINE KINASE 7 1125 - -
Lsi05g01420 1131 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Lsi05g01420 1131 Pfam PAS fold 80 196 IPR013654 GO:0006355
Lsi05g01420 1131 PANTHER PHYTOCHROME 7 1125 - -
Lsi05g01420 1131 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00857 Lsi-Chr2:8039562 Lsi05g01420 Lsi-Chr5:22155641 0 dispersed
Lsi05g01420 Lsi-Chr5:22155641 Lsi08g00755 Lsi-Chr8:15879561 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01420 K12121 - csv:101212197 2217.58