Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01437 ATGGAGCTTCAGAAGCGCCTAGATCAGAGTCTCCCAGAGAGGAAAGGCCATAAGCGGAAACTGGAGGAGGAATTTGAAGAGGAACGGGAGATCTCTGTACCTACAGGGGACGCCAAGCAAGCGTTACTCACCGAGGTCAGTGATCAAGTTGAAATTCTCAATTCCACTTTTTCATGGAAGGAAGCCGATCGAGCTGCTGCTAAGCGAGCTACTCACGTTCTTGCCGAGCTTGCTAAGAACGAAGAAGTAGTAAACGTGATTGTGGAAGGTGGAGCGGTACCGGCTTTAGTCAAGCATCTACAAGCACCGCCTACTGTTGAAGGTGATCGTAGTCTTAAGCCATTCGAGCACGAGGTTGAGAAAGGAAGTGCTTTTGCTCTTGGACTACTGGCTGTAAAGCCAGAGCATCAGCAGCTGATAGTTGACATTGGCGCTCTATCACACCTCGTTGAACTATTAAAGAGGCACAAGGATGGTTCTTCTCGAGCTGTAAACAGTGTTATTCGTAGAGCTGCAGATGCCATTACAAATCTTGCCCATGAGAACAGTTTCATCAAAACACGGGTTAGGATGGAAGGTGGAATTCCTCCGCTTGTTGAATTGCTTGAATTTACTGACACAAAGGTGCAAAGAGCTGCTGCTGGGGCATTACGAACATTGGCCTTTAAGAACGATGAGAACAAAAACCAGATTGTCGAGTGCAATGCTCTCCCTACACTCATTTTGATGCTTCGTTCTGAGGATGCTGCTATACATTATGAAGCGGTTGGTGTTATTGGAAATCTGGTGCACTCATCCCCAAATATAAAGAGAGAAGTTCTTCTTGCAGGAGCTTTGCAACCTGTTATTGGATTACTCAGTTATGCTGTGAAGACAAAGTTGATCTCCAGTTCCTCTAGTCTGAATTATGTTTTACCTTTTGTGTTAGTTCTTGCTGCTCTGAGAGCCAAAGGGAGGCAGCGTTGTTACTTGGACAATTTGCGGCAACTGATTCGGATTATTCACATTGTACAGAGAGGTGCTGTTCGACCCTTAATTGAGATGCTTCAATCACCTGATGTACAGCTTCGAGAAATGTCAGCTTTTGCATTGGGGAGGTTGGCACAGGAAACTCATAATCAAGCTGGTATTGCTCATAATGGTGGTCTAATGCCACTACTGAAGCTTCTGGATTCAAAAAATGGTTCTTTGCAACATAATGCGGCGTTTGCTCTTTATGGTCTTGCAGATAATGAGGATAATGTATCTGATTTTATTAGGGTGGGAGGAGTTCAGAAGCTTCAAGATGGAGAATTTATAGTGCAAGCAACAAAAGATTGTGTAGCAAAGACACTCAAGAGATTAGAGGAGAAGATACATGGAAGGGTTTTAAATCACTTATTACATCTAATGCGTGTAGCTGAGAAAGCTGTGCAAAGACGAGTCTCTCTTGCTCTTGCTCATCTTTGTCTGGAGTTGCTTCTTGGCCTGCTTGGTTCTTCAAGTCTCAGGCAGCAGCTTGATGGTGCTGTTGCACTGTACAAGCTGGCAAATAAAGCCACGACTCTTTCTCCTGTAGATGCTGCTCCACCATCCCCAACACCACAGGTTTACCTGGGCGAGCAGTATGTGAACAATCCGACACTATCTGATGTGACTTTTCTTGTTGAAGGAAGACGCTTCCATGCCCACAGAATTTGCTTGCTTGCTTCTTCGGATGCATTCCGTGCCATGTTTGATGGTGGCTATCGGGAGAAGGATGCTAAGGATATAGAAATTCCAAATATTAGATGGGAAGTTTTTGAGCTAATGATGAGATTTGTGTACACCGGATCTGTAGATGTTTCATTGGATATTGCGCAAGATCTCCTGAGAGCTGCCGATCAGTATCTCTTGGAGGGACTTAAACGATTGTGCGAATACACCATTGCACAGGATATATCCCTGGAAAATGTCTCAAGCATGTATGAACTCTCAGAAGCCTTTAATGCCATATCTTTGAGACACACGTGCATCCTTTTTATCTTGGAACAATTTGAAAAACTCAGTGTAATGCCAGGATTTAGATCCTTCAGTGCTTGCTTTAAATGGAGAGTATCACTGTCACTGTCAGAAGCTCTTAGAGATGCACCTAAAGAAGCCGTGGATAGAAAAGCATGGTTTCTCCTTGCATTTTCTAAGCCATTCTTCATGCCCAATATTTGCAGGCACTCTCTTCTAATTCAGCGCATACTTCCCGAGATCCGCAATTATTTTGCTAAAGCCTTGACCAAGGTTAATCTCCAAAGCTCACGGCTGTAG 2280 44.17 MELQKRLDQSLPERKGHKRKLEEEFEEEREISVPTGDAKQALLTEVSDQVEILNSTFSWKEADRAAAKRATHVLAELAKNEEVVNVIVEGGAVPALVKHLQAPPTVEGDRSLKPFEHEVEKGSAFALGLLAVKPEHQQLIVDIGALSHLVELLKRHKDGSSRAVNSVIRRAADAITNLAHENSFIKTRVRMEGGIPPLVELLEFTDTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKREVLLAGALQPVIGLLSYAVKTKLISSSSSLNYVLPFVLVLAALRAKGRQRCYLDNLRQLIRIIHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQETHNQAGIAHNGGLMPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQKLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLHLMRVAEKAVQRRVSLALAHLCLELLLGLLGSSSLRQQLDGAVALYKLANKATTLSPVDAAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGRRFHAHRICLLASSDAFRAMFDGGYREKDAKDIEIPNIRWEVFELMMRFVYTGSVDVSLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELSEAFNAISLRHTCILFILEQFEKLSVMPGFRSFSACFKWRVSLSLSEALRDAPKEAVDRKAWFLLAFSKPFFMPNICRHSLLIQRILPEIRNYFAKALTKVNLQSSRL 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22274060 22279736 + Lsi05G014370.1 Lsi05g01437 663929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01437 759 Pfam Armadillo/beta-catenin-like repeat 224 263 IPR000225 GO:0005515
Lsi05g01437 759 Pfam Armadillo/beta-catenin-like repeat 189 221 IPR000225 GO:0005515
Lsi05g01437 759 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 754 IPR044282 -
Lsi05g01437 759 SUPERFAMILY POZ domain 534 637 IPR011333 -
Lsi05g01437 759 ProSiteProfiles BTB domain profile. 543 610 IPR000210 GO:0005515
Lsi05g01437 759 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 235 277 IPR000225 GO:0005515
Lsi05g01437 759 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 340 382 IPR000225 GO:0005515
Lsi05g01437 759 SUPERFAMILY ARM repeat 333 510 IPR016024 -
Lsi05g01437 759 Gene3D Potassium Channel Kv1.1; Chain A 524 669 IPR011333 -
Lsi05g01437 759 Pfam BTB/POZ domain 536 638 IPR000210 GO:0005515
Lsi05g01437 759 Gene3D - 33 162 IPR011989 -
Lsi05g01437 759 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 381 423 IPR000225 GO:0005515
Lsi05g01437 759 SMART BTB_4 543 640 IPR000210 GO:0005515
Lsi05g01437 759 Gene3D - 309 517 IPR011989 -
Lsi05g01437 759 SMART arm_5 182 222 IPR000225 GO:0005515
Lsi05g01437 759 SMART arm_5 370 410 IPR000225 GO:0005515
Lsi05g01437 759 SMART arm_5 80 132 IPR000225 GO:0005515
Lsi05g01437 759 SMART arm_5 328 369 IPR000225 GO:0005515
Lsi05g01437 759 SMART arm_5 224 264 IPR000225 GO:0005515
Lsi05g01437 759 SMART arm_5 133 180 IPR000225 GO:0005515
Lsi05g01437 759 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 754 - -
Lsi05g01437 759 SUPERFAMILY ARM repeat 46 286 IPR016024 -
Lsi05g01437 759 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 183 IPR000225 GO:0005515
Lsi05g01437 759 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 91 145 IPR000225 GO:0005515
Lsi05g01437 759 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 228 IPR000225 GO:0005515
Lsi05g01437 759 MobiDBLite consensus disorder prediction 1 32 - -
Lsi05g01437 759 CDD BTB_POZ_ARIA_plant 530 645 - -
Lsi05g01437 759 Gene3D - 163 305 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01437 - - - csv:101207702 1178.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01437 Lsi-Chr5:22274060 Lsi09g01366 Lsi-Chr9:21700801 4.16E-15 dispersed
Lsi08g01647 Lsi-Chr8:24322527 Lsi05g01437 Lsi-Chr5:22274060 5.29E-06 dispersed
Lsi05g01437 Lsi-Chr5:22274060 Lsi05g01464 Lsi-Chr5:22494107 1.87E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g464 . . . . . Bpe14g01175 . . . . Cma06g01423 Cma14g01691 Car06g01226 Car14g01525 Sed02g1251 Cpe08g00251 Cpe03g01425 Bhi01g00836 Tan10g0863 Cmetu06g0635 . . . Lcy11g1523 . . . . . . . . . Cone7ag0235 Cone4ag0225 Lsi05g01437 . . Cme06g00626 Blo02g00552 . . . . . . . . Cmo06g01425 Cmo14g01736 . . . . . . . . . . . . . Cla05g00562 Cam05g0618 Cec05g0628 Cco05g0623 Clacu05g0614 Cmu05g0582 Cre05g0650 . Csa03g01351 Chy06g00596 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008033 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25374 PF00651 BTB 8.10E-26 CL0033 Lsi TR