Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01438 ATGAAGAGAAAAGGAGTCATCTTGAAATGGCTTGACAACAATCTGCCTTCAGCGGCTGGATTTAGAGCACGTTCGATAATGGACTCTGTAACAAAAAGTTCAGAACGTAGGCCATTTTCTATCAAATTGTGGCCTCCTAGTGAAAATACTCGGAAAATGCTTGTGGAGCGGATGACAAATAACCTTACCAGCAAATCCTTTTTCACCCAAAAATATGGTACTCTTACTCAGGAAGAGGCTACAGATGAGTCAAAGAGAATTGAAGATATTGCTTTTGGAACAGCTAATCAGAATTATGAAAAACAGCCAGATGGTGATGGGGGTGCTGCTGTGCAACTTTATGCCAAGGAATGCAGCAGGCTTCTTCTCGAGGTTCTTAAGAGAGGTCCTAAAGTTGAGGCAGACAAGGAGGCTGGATCTGATATCACTAGCGCTCCTCGTGAAATCTGTTTTGACATCTCAAGAGGTCGACGAGCCTTTATCGAGGCAGAGGAAGCTGAAGAACTTCTAAAGCCTTTGAAAGAGCCAGGGAATTCTTATACCAAGATATGTTTCAGCAACCGAAGCTTTGGTTTAGAAGCAGCTCGTGTTACTGAGCCCATTCTTGTGTCCCTCAAGGATCAATTAAAAGAAGTAGATCTCTCTGATTTTATTGCAGGAAGACCAGAGTCAGAAGCTCTAGAAGTTATGAAACTGTTCTCTGATGCTTTAGAAGGCAGCATCTTGAGATCCCTGAACCTCTCAAACAATGCCTTAGGTGAGAAGGGTGTTAGAGCTTTTGGCTCTCTCCTGAAATCACAGGCTTGTTTGGAGGAGCTATATTTGATGAATGATGGAATTTCCAAGGAAGCTGCTCAGGCGGTATCCGAGTTGATTCCTTCAACAGATAAGCTTAGGATCCTTCATTTTCATAATAACATGACGGGCGACGAAGGTGCTTTTGCTATCGCCGAAGTTGTAAAGCGTTCTCCTCTATTGGAAGATTTCCGTTGCTCCTCTACAAGGATAGACTCAGAGGGGGGTGTTGCCTTATCTTTAGCACTCAGGACTTGTACCGGATTGAAAAAACTTGACCTTCGAGACAACATGTTTGGAGTGGAAGGTGGAGTTTCTCTGAGTAAAGCCCTTTCACATCATGCAGATCTCAAGGAGCTGTATTTGAGTTACCTGAACTTGGAAGATGAAGGTGCAATTGCCATAGCCAATATACTGAAGGACAGTGCTCCTGCACTTGAAGTCTTGGAAATGGCTGGAAATGACATTACAGCTGAAGCTGCTTCTGCATTAGCTGCTTGTATAGCTCAAAAGCCCCATCTGACCAGCTTGAGTTTGGCTGAGAATGAACTGAAGGATGAAGGAACTATCCAGATCAGTAAGGCATTAGAAGGTCTCATCAAAATAAAGGAAGTTGACATGAGTACTAACTTAATTAGGAGAGCTGGTGCTCGGGTTTTAGCTCAAACTGTGGTTCAAAAGCCTGGTTTTCAACTGCTGAACATCAATGGAAATTTCATTTCTGATGAAGGCATTGATGAGTTGAAGGATATTTTCAAGAAATTTCCGAATATGCTCGGGCCCTTGGATGAGAATGATCCTGAAGGGGAAGATGGCGACGACAAGGAATCTGTAGCAGATGATGACGATGATGATGAGGATGAATTGGGATCAAAACTAAAGAACCTTGAAGTTAATCAAGAGAACTAG 1704 42.96 MKRKGVILKWLDNNLPSAAGFRARSIMDSVTKSSERRPFSIKLWPPSENTRKMLVERMTNNLTSKSFFTQKYGTLTQEEATDESKRIEDIAFGTANQNYEKQPDGDGGAAVQLYAKECSRLLLEVLKRGPKVEADKEAGSDITSAPREICFDISRGRRAFIEAEEAEELLKPLKEPGNSYTKICFSNRSFGLEAARVTEPILVSLKDQLKEVDLSDFIAGRPESEALEVMKLFSDALEGSILRSLNLSNNALGEKGVRAFGSLLKSQACLEELYLMNDGISKEAAQAVSELIPSTDKLRILHFHNNMTGDEGAFAIAEVVKRSPLLEDFRCSSTRIDSEGGVALSLALRTCTGLKKLDLRDNMFGVEGGVSLSKALSHHADLKELYLSYLNLEDEGAIAIANILKDSAPALEVLEMAGNDITAEAASALAACIAQKPHLTSLSLAENELKDEGTIQISKALEGLIKIKEVDMSTNLIRRAGARVLAQTVVQKPGFQLLNINGNFISDEGIDELKDIFKKFPNMLGPLDENDPEGEDGDDKESVADDDDDDEDELGSKLKNLEVNQEN 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22282618 22285176 + Lsi05G014380.1 Lsi05g01438 663930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01438 567 Coils Coil 551 567 - -
Lsi05g01438 567 Gene3D WPP domain 40 138 IPR038214 -
Lsi05g01438 567 PANTHER RAN GTPASE-ACTIVATING PROTEIN 2 27 567 - -
Lsi05g01438 567 Pfam Leucine Rich repeat 381 401 IPR001611 GO:0005515
Lsi05g01438 567 Pfam Leucine Rich repeat 411 430 IPR001611 GO:0005515
Lsi05g01438 567 Pfam Leucine Rich repeat 242 260 IPR001611 GO:0005515
Lsi05g01438 567 Pfam Leucine Rich repeat 351 373 IPR001611 GO:0005515
Lsi05g01438 567 Pfam Leucine Rich repeat 436 453 IPR001611 GO:0005515
Lsi05g01438 567 MobiDBLite consensus disorder prediction 529 553 - -
Lsi05g01438 567 Gene3D Ribonuclease Inhibitor 155 436 IPR032675 -
Lsi05g01438 567 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 27 567 IPR045203 GO:0005096
Lsi05g01438 567 Pfam WPP domain 40 135 IPR025265 -
Lsi05g01438 567 MobiDBLite consensus disorder prediction 523 567 - -
Lsi05g01438 567 SUPERFAMILY RNI-like 160 536 - -
Lsi05g01438 567 SMART LRR_RI_2 351 378 - -
Lsi05g01438 567 SMART LRR_RI_2 436 463 - -
Lsi05g01438 567 SMART LRR_RI_2 408 435 - -
Lsi05g01438 567 SMART LRR_RI_2 295 322 - -
Lsi05g01438 567 SMART LRR_RI_2 379 406 - -
Lsi05g01438 567 SMART LRR_RI_2 464 491 - -
Lsi05g01438 567 SMART LRR_RI_2 267 294 - -
Lsi05g01438 567 SMART LRR_RI_2 492 519 - -
Lsi05g01438 567 SMART LRR_RI_2 239 266 - -
Lsi05g01438 567 Gene3D Ribonuclease Inhibitor 437 551 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01438 K14319 RANGAP1; Ran GTPase-activating protein 1 - csv:101208192 917.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02238 Lsi-Chr2:28828085 Lsi05g01438 Lsi-Chr5:22282618 0 dispersed
Lsi04g01512 Lsi-Chr4:22751880 Lsi05g01438 Lsi-Chr5:22282618 2.58E-14 dispersed
Lsi05g01438 Lsi-Chr5:22282618 Lsi08g01503 Lsi-Chr8:23152512 3.14E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g461 . . . . . Bpe14g01174 . . . . Cma06g01424 Cma14g01690 Car06g01227 Car14g01523 Sed02g1253 . Cpe03g01424 Bhi01g00837 Tan10g0865 Cmetu09g1642 . . . Lcy11g1522 . . . . . . . . . . . Lsi05g01438 . . Cme06g00627 . . . Bda13g00139 . . . . . Cmo06g01427 Cmo14g01734 . . . . . . . . . . . . . Cla05g00563 Cam05g0619 Cec05g0629 Cco05g0624 Clacu05g0615 Cmu05g0583 Cre05g0651 . Csa03g01352 Chy06g00597 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001623 3 2 2 2 3 2 3 2 2 2 2 2 3 2 1 3 2 4 2 2 2 2 1 2 2 2 2 5 3 2 69