Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01440 ATGGGGAAGAAGAAGCATAAGCGACCGGAATCGGAATCGGAGGCACTTGACAGAGACGACTTCAAAGCTAAGCGTGAAACTGAGCTCATTAATGGATGCTCTCCTGAGAAAAAGAAGAAGAAGAAGAAGAAGAGGAAAGTCGAGAATGATGAAATCGAGGTAGAGAAGAGGAAGCCGATTTCAAAACCTACAGTGAGCATTGCGGTTTCCGGTTCCATCATTGACAACGCTCAATCCCTTGAGCTTGCCACCAGATTGGCTGGTCAAATTGCTCGTGCGGCAACCATATTTCGAATTGACGAGGTGGTGGTATTTGACAGTGGAAGGAGTTCAACGACTGGCTCGGATATTGCGGCAGCGAACAATTCAGATGAGGATGAAAGTGGCGCTGCTTTCTTAATAAGGATCTTGAAGTATCTTGAGACTCCACAATACTTGAGAAAAGCTCTTTTTCCAAAGCACAACAATTTAAGATTTGTGGGGTTGTTGCCCCCGCTTGATGCCCCTCACCATTTGCGCAAGCATGAATGGGGTCCCTATCGAGAAGGTGTTACCCTGAAAGAAAGAGCTCCAGATGCTAGAGGAACACCAGTTGATGTTGGTCTGAGTAAGAACGTTGTTGTTGATGAAATAGTTGAACCTGGAATAAGAGTAACGGTAGCTATGGGATCAGATCGCAATTTACTTTCTGATCTACCCCGCCAGGTGGTCTCATCCTCAAAGCCTGTGGAAGAAGGACTTTACTGGGGTTATAGAGTGCGATATGCTTCTTCTTTGAGTGCGGCTTTTAAGGAGAGTTCATACGAGGGTGGTTACGATCACTTGATTGGCACCTCAGAGCATGGAATGGTAATCAAGTCCTCGGAACTGACACTACCTTCTTTCAGGCATCTTTTAATTGCCTTTGGTGGACTTGCCGGTTTGGAAGAGAGCATTGAGGAAGACAACAACTTCAAGAGTAAAAATGCTCACGAGATCTTTTCATCATACTTGAATACATGTCCATTGCAAGGAAGCCGCACAATTCGAACAGAGGAAGCAATATTCATCTCTCTCCAGTATTTCCAAGAACCGATAAGCAAGGCATTGCAGATTGCAGCAGATTAG 1107 45.17 MGKKKHKRPESESEALDRDDFKAKRETELINGCSPEKKKKKKKKRKVENDEIEVEKRKPISKPTVSIAVSGSIIDNAQSLELATRLAGQIARAATIFRIDEVVVFDSGRSSTTGSDIAAANNSDEDESGAAFLIRILKYLETPQYLRKALFPKHNNLRFVGLLPPLDAPHHLRKHEWGPYREGVTLKERAPDARGTPVDVGLSKNVVVDEIVEPGIRVTVAMGSDRNLLSDLPRQVVSSSKPVEEGLYWGYRVRYASSLSAAFKESSYEGGYDHLIGTSEHGMVIKSSELTLPSFRHLLIAFGGLAGLEESIEEDNNFKSKNAHEIFSSYLNTCPLQGSRTIRTEEAIFISLQYFQEPISKALQIAAD 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22287298 22292079 - Lsi05G014400.1 Lsi05g01440 663932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01440 368 MobiDBLite consensus disorder prediction 1 35 - -
Lsi05g01440 368 CDD HsC9orf114-like 64 355 IPR003750 -
Lsi05g01440 368 Coils Coil 37 57 - -
Lsi05g01440 368 PANTHER CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED 12 364 IPR003750 -
Lsi05g01440 368 SUPERFAMILY alpha/beta knot 62 356 IPR029028 -
Lsi05g01440 368 Pfam Putative RNA methyltransferase 64 354 IPR003750 -
Lsi05g01440 368 Gene3D - 175 240 IPR012340 -
Lsi05g01440 368 Gene3D - 65 353 IPR029026 -
Lsi05g01440 368 SUPERFAMILY Nucleic acid-binding proteins 169 250 IPR012340 -
Lsi05g01440 368 MobiDBLite consensus disorder prediction 1 55 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01440 K09142 SPOUT1; methyltransferase [EC:2.1.1.-] - csv:101207949 671.774
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g459 . . . . . . . . . . Cma06g01425 Cma14g01689 Car06g01228 Car14g01522 Sed12g0906 . Cpe03g01423 Bhi01g00838 Tan10g0866 Cmetu06g1993 . Hepe05g1534 . Lcy11g1521 . . . . . . . . . . . Lsi05g01440 . . Cme06g00628 . Blo07g00211 Bda11g00567 . . Bpe13g00617 . Bma06g01546 . Cmo06g01428 Cmo14g01733 . . . . . . . . . . . . . Cla05g00564 Cam05g0620 Cec05g0630 Cco05g0625 Clacu05g0616 Cmu05g0584 Cre05g0652 . Csa03g01353 Chy06g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011621 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30