Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01442 ATGGCCACAATGGTCTGTCGTGGCCCTCAACCCTGCGTCGATTCTCAATTCATCGAAACAACCTGGCCTCGCATCAAATTCAATCCTCATCTCCCTTCTCTTCAATTCGCTTTCAATTCTTGTTTCCTCGATCTCGATTCTGCTAAATCCCTAACCCAATGCGACGGATTTAACCAGATTGTTCTTAATCACAACGCTACTAACTCTGTTCCTCCTCCTTCCGACTACGACGCCTGCAAGAAATCTGTTGACGTCGGCGCTGAAGTGAAATCCGCAATGGCGATTAAGAAATTACAATCTGACTATGTTCATCCGCTCGTTAAGCGCTCTCGCTCTACTCTCAGTGATAAGAGTCTCGCGCTCTGTACTGAGAATTTAGGGAATGAGACTGGAGTGGAGTTTGTCGAGGATGCTATTTTTTCCGATCTGAAATTTGAGCGGTCTACGACCAGGAAGCGAGTGAAATCGATTAATAATCAAGGTAATAAGAAAGTATTTCCACCGCCTCTGACCACAATCGCCGGTGTTGATTCCATTCGTGTACGGTCATATCGTGAAGACGGAAGGTTGGTAATGGAGGCGGTGAAGACTCCGGCGAGACTCTCGTATTTTCATGTCGAACGAAGCCATGGCCGCCTTCGATTGAGCATTTTGAAAAGTAGCACTCCGAGATTTGACTCCGAAGAAGAAAGTGTGGAGAAGGAAAAAGAAAAGGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATAAAAATAAGAAACGACGACGTTGAAGTGGGGGCCGAGGAAGGTAATTGTGAGGAAGATTTGGGGAGGAAAGTGAAAGAAAATGGAAATCTCGGAGGGGCAGAAATCGAAATAGAAAAGTTTGAGAGGCCATGCAGGTGCAACGAGGCGGGTGAAAATAATAATATTGACGAAATAAAAAACAACAATGAAATGTTGGTATTGACTCGGGAGCCTCTCTCCATTTGGGTCTCTTCTTAA 993 44.61 MATMVCRGPQPCVDSQFIETTWPRIKFNPHLPSLQFAFNSCFLDLDSAKSLTQCDGFNQIVLNHNATNSVPPPSDYDACKKSVDVGAEVKSAMAIKKLQSDYVHPLVKRSRSTLSDKSLALCTENLGNETGVEFVEDAIFSDLKFERSTTRKRVKSINNQGNKKVFPPPLTTIAGVDSIRVRSYREDGRLVMEAVKTPARLSYFHVERSHGRLRLSILKSSTPRFDSEEESVEKEKEKVEEEEEEEEEEEEIKIRNDDVEVGAEEGNCEEDLGRKVKENGNLGGAEIEIEKFERPCRCNEAGENNNIDEIKNNNEMLVLTREPLSIWVSS 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22302551 22303543 - Lsi05G014420.1 Lsi05g01442 663934

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01442 330 Coils Coil 225 258 - -
Lsi05g01442 330 Pfam Fantastic Four meristem regulator 166 216 IPR046431 -
Lsi05g01442 330 PANTHER FANTASTIC FOUR-LIKE PROTEIN (DUF3049) 1 308 IPR021410 -
Lsi05g01442 330 MobiDBLite consensus disorder prediction 235 252 - -
Lsi05g01442 330 PANTHER PROTEIN FANTASTIC FOUR 3 1 308 - -
Lsi05g01442 330 MobiDBLite consensus disorder prediction 224 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01442 - - - cmo:103483728 472.626
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01442 Lsi09g01340 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02296 Lsi-Chr2:29545363 Lsi05g01442 Lsi-Chr5:22302551 2.87E-19 dispersed
Lsi03g00126 Lsi-Chr3:1767766 Lsi05g01442 Lsi-Chr5:22302551 7.57E-09 dispersed
Lsi05g00930 Lsi-Chr5:16471664 Lsi05g01442 Lsi-Chr5:22302551 1.96E-21 dispersed
Lsi05g01442 Lsi-Chr5:22302551 Lsi10g01154 Lsi-Chr10:15848317 2.19E-10 dispersed
Lsi06g00617 Lsi-Chr6:8682730 Lsi05g01442 Lsi-Chr5:22302551 3.45E-16 transposed
Lsi10g01135 Lsi-Chr10:15625437 Lsi05g01442 Lsi-Chr5:22302551 3.31E-15 transposed
Lsi05g01442 Lsi-Chr5:22302551 Lsi09g01340 Lsi-Chr9:21365592 1.33E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g456 . . . . . Bpe14g01172 . . Cmo08g01134 Cmo17g00243 . Cma14g01688 Car06g01229 Car14g01521 . Cpe08g00248 Cpe03g01422 . . . . . . . Cla06g00560 Cam06g0600 Cec06g0600 Cco06g0605 Clacu06g0586 Cmu06g0581 Cre06g1347 . . Cone7ag0229 Cone4ag0219 Lsi05g01442 . . Cme06g00629 Blo02g00554 Blo07g00210 Bda11g00566 . . . . Bma06g01545 . Cmo06g01429 Cmo14g01732 Cma08g01162 Cma17g00257 Car08g01039 Car17g00231 Cpe12g00213 Cpe17g00134 Bhi12g01820 . . . . . . Cla05g00565 Cam05g0621 Cec05g0631 Cco05g0626 Clacu05g0617 Cmu05g0585 Cre05g0653 Lsi09g01340 Csa03g01354 Chy06g00599 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010240 1 0 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 32