Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01449 ATGAAAAGACAACAGTTCCTGATAAGGTCTCTTGGAGGTTTCGGTGAATGCACCTATCAGAATAGACGGCAACAAATCAAAGCCATGAGTGGGACTTCGATTGAGGCTGATGCTGAGAACATCCTAAGAGCAATTACACCTAGTCTTGATCCCAATAGATACAAAGGCCAGGCGGGAAAGATAGCTGTTATTGGTGGATGTCGTGAGTACACAGGTGCTCCCTACTTTGCAGCTATATCAGCTTTGAAAATTGGTGCAGACTTATCTCATGTTTTCTGCACAAAAGATGCTGCTCCTGTCATAAAGAGCTATAGTCCAGAGTTAATTGTGCATCCTGTACTAGAAGAATCATACAGTGTCAGAGATGAGGAAAAGAAGTTCATCGCAGAAAGGGTTCTTGCTGAGGTTGACAAGTGGCTGGAAAGATTTGATTGTCTTGTCATTGGTCCAGGCCTTGGAAGGGACCCATTTCTTCTGGATTGTGTCAGTGAAATCATAAAGCATGCAAGGCAGAGCAATATACCAATGGTCATAGATGGGGATGGTCTCTTTCTGATCACTGACAATCTTCACCTTGTAAGCAATTACCCCCTGGCGGTCCTGACTCCAAATGTAAATGAATATAAACGTCTTGTGAAAAATGTGCTGCTTGCTGAAGTCGATGAACAAGATGCTCCTAACCAATTGCTGTCTCTTGCCAAAAGTCTTCGGCTCACTAAACTTTTGGACGTGATCAGGATTGGTGGCCTGACTATCCTCAGGAAAGGGAGAGATGACCTCATTAGTGACGGTGAGACAGTCAAATCAGTGAGCATTTATGGTTCTCCCCGCCGTTGTGGTGGCCAAGGTGATATACTTTCAGGAAGGCAATCTAGAGGACATTTCTCCAGCTCACTAAAAGAATCTGCAGATCTTGCAACTGTGCTGAAGATACTCGCTATCCTGCCTATCACCATAGACAAAATTTTCAATAATTTTGAGGTTCCTGTTAATGCGTTTCAACACTACATGACTTTACATTATGTTGTGATTAGATGTTAA 1041 43.04 MKRQQFLIRSLGGFGECTYQNRRQQIKAMSGTSIEADAENILRAITPSLDPNRYKGQAGKIAVIGGCREYTGAPYFAAISALKIGADLSHVFCTKDAAPVIKSYSPELIVHPVLEESYSVRDEEKKFIAERVLAEVDKWLERFDCLVIGPGLGRDPFLLDCVSEIIKHARQSNIPMVIDGDGLFLITDNLHLVSNYPLAVLTPNVNEYKRLVKNVLLAEVDEQDAPNQLLSLAKSLRLTKLLDVIRIGGLTILRKGRDDLISDGETVKSVSIYGSPRRCGGQGDILSGRQSRGHFSSSLKESADLATVLKILAILPITIDKIFNNFEVPVNAFQHYMTLHYVVIRC 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22355405 22360127 + Lsi05G014490.1 Lsi05g01449 663941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01449 346 CDD YXKO-related 51 288 IPR000631 GO:0016836
Lsi05g01449 346 ProSiteProfiles YjeF C-terminal domain profile. 38 288 IPR000631 GO:0016836
Lsi05g01449 346 Pfam Carbohydrate kinase 62 288 IPR000631 GO:0016836
Lsi05g01449 346 TIGRFAM yjeF_cterm: YjeF family C-terminal domain 44 288 IPR000631 GO:0016836
Lsi05g01449 346 PANTHER ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER 1 300 - -
Lsi05g01449 346 PANTHER ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE 1 300 - -
Lsi05g01449 346 Hamap ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 38 345 IPR000631 GO:0016836
Lsi05g01449 346 Gene3D - 37 291 IPR029056 -
Lsi05g01449 346 SUPERFAMILY Ribokinase-like 40 291 IPR029056 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01449 K17757 CARKD; ATP-dependent NAD(P)H-hydrate dehydratase [EC:4.2.1.93] - csv:101209583 519.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g442 . . . . . Bpe14g01317 . . . . . Cma14g01681 . Car14g01515 . . Cpe03g01419 Bhi01g00850 . . . . . . . . . . . . . . . Cone7ag0220 Cone4ag0212 Lsi05g01449 . . Cme06g00636 . . . . . . Bma02g00691 . . . Cmo14g01726 . . . . . . . . . . . . . Cla05g00573 Cam05g0628 Cec05g0639 Cco05g0633 Clacu05g0624 Cmu05g0592 Cre05g0660 . Csa03g01361 Chy06g00606 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005984 1 4 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 2 2 1 1 1 1 1 38