Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g01454 | ATGAATGAACATCTTAGGGTTTTGAGATCTTTGACCCCTTCTTTCTATATCAAAAGGGGAGATCAAGCCTCCATTATTGGGGGAGTCATAGAGTTCATCAAGGAGTTGCATCAAGTTTTACAATCGTTGGAGTCCAACAAACGGAGGAGGAAGAGTATAAGCCCTAGTCCTGGTCCGAGCCCGAGACCACAGTTGATCGCGGGATCCGATAATGGCCCGTTTGGATTTGAAAATGGAGTTGATGTCGTCGGAGCGTGTTGCAATTCATCGGTTGCGGACGTCGAAGCAAAGATTTCGGGTTCGAACGTGATTTTGAAGATCATTTCTCGACGGATTCCCGGCCAACTTTCGAAGATGATTGGTGTCTTGGAGAGGCTCTCCTTTGAGGTTCTTCATCTCAACATTAGTAGTATGGATGACACGGTTCTGTACTCTTTTGTTGTCAAGATAGGGCTTGAATGTCAGCTAAGTTTGGAGGAATTAGCTTATGAAGTTCAACAGAGCTTCTGCTCTCAAGTGTATTTGTGCCAGTGA | 534 | 45.13 | MNEHLRVLRSLTPSFYIKRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSISPSPGPSPRPQLIAGSDNGPFGFENGVDVVGACCNSSVADVEAKISGSNVILKIISRRIPGQLSKMIGVLERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLEELAYEVQQSFCSQVYLCQ | 177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 22392843 | 22394423 | + | Lsi05G014540.1 | Lsi05g01454 | 663946 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g01454 | 177 | MobiDBLite | consensus disorder prediction | 47 | 68 | - | - | |
| Lsi05g01454 | 177 | PANTHER | TRANSCRIPTION FACTOR FAMA | 1 | 174 | IPR044283 | GO:0003700|GO:0010052 | |
| Lsi05g01454 | 177 | PANTHER | TRANSCRIPTION FACTOR MUTE | 1 | 174 | - | - | |
| Lsi05g01454 | 177 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 1 | 36 | IPR011598 | GO:0046983 | |
| Lsi05g01454 | 177 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 1 | 49 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi05g00078 | Lsi-Chr5:1507893 | Lsi05g01454 | Lsi-Chr5:22392843 | 6.01E-20 | dispersed | |
| Lsi05g01454 | Lsi-Chr5:22392843 | Lsi08g00990 | Lsi-Chr8:18357345 | 3.82E-31 | dispersed | |
| Lsi05g01454 | Lsi-Chr5:22392843 | Lsi05g01835 | Lsi-Chr5:25630566 | 5.65E-46 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g01454 | - | - | csv:101203445 | 307.375 |