Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g01456 | ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAACTATCTTCAAAACCCACCTCCGCCTCCTCCTCCGCCCTACCTTTCTTCTTCCTCTTTCTATTACCCCTCTGAACCCCAATCTCTTTCTCCTGCTCCACCTCCGCCGCCGCCGCTGCAGACCCATCAGTTCACCAATTCCCACCCTCCTCCGCCGCACAGCCACCCTTACGGTCCAACTTCTCATCCACTACCTCTGCCGTCGATTCCTCATCCCCCTGCCCCTGCCCCCGCCCCCGCTCCTCACCCCTATTACTTCTCCGGTGGGTACAATTCTTGTAATTATGGGAATTCTTCGATGGGGCGTTTCAATTTTCACCCTTATTATGCCAATCAGAGTAATGGGTGGTCCCAAATTCGACCGGCCATGGGTCCGCCGTTGCTTCCGCCACCGCCTTTGCCGTTTGTGGAGCATCGGCAAGCGAAGAAGGTTAGAAATGATGTGAATGTACATAAGGATACTTTAAGGATTGAGGTGGACGAGGAGAACCCTGATCATCATTTGGTTTCTTTCGTTTTCGATGCGTTGTATGATGGAAGCGTAACCATTCTATTTTTTGCCAAGGAGGAGCCCAACTGTAGGTTTGTTCCAGTATATCCTGATGCCTTTAAGCCAGTAAAAATCCCATTTCAGAAGGGTCCTGCTCAGAAATTCTTTCAGCCTGTGGGAACTGGCTTTGACTTGGGGTTTTTCGAGTTGGACGACCTCTCAAAACCTTCACCTGCAGAAGACATTTTCCCTCTTGTTATATCAGCTGAGACTTGTTCGCCCTCTCAGTCCGATGATGAAAGAATTGGTGAACCTCAACGAGATAATTCACACATGCAAATCACTCAAGCTGTTTTGGAGAAGAAAAATGGTGGTCCTTTCCAGGTTAGAGTGATTAGGCAACTACTATGGATTGATGAAGTGAGATATGAGTTGCGTGAAATATTTGGAATAGGGAGTTCATCAGCAGAAGGTTTTGACGATAATGACACAGGGAAGGAGTGTGTGATTTGCATGACTGAACCCAAGGATACCGCTGTATTACCATGCCGACATTTGTGCATGTGCAGTGAATGTGCCAAGGAACTGAGGCTTCAATCTAATAAATGTCCTATTTGCCGTCAACCGATCGAAGAACTTATAGAAATCAAGATAAATAATAGCGACCAGTGA | 1194 | 47.07 | MGISWSNRRRNNYLQNPPPPPPPPYLSSSSFYYPSEPQSLSPAPPPPPPLQTHQFTNSHPPPPHSHPYGPTSHPLPLPSIPHPPAPAPAPAPHPYYFSGGYNSCNYGNSSMGRFNFHPYYANQSNGWSQIRPAMGPPLLPPPPLPFVEHRQAKKVRNDVNVHKDTLRIEVDEENPDHHLVSFVFDALYDGSVTILFFAKEEPNCRFVPVYPDAFKPVKIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPAEDIFPLVISAETCSPSQSDDERIGEPQRDNSHMQITQAVLEKKNGGPFQVRVIRQLLWIDEVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHLCMCSECAKELRLQSNKCPICRQPIEELIEIKINNSDQ | 397 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 22427884 | 22432038 | - | Lsi05G014560.1 | Lsi05g01456 | 663948 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g01456 | 397 | MobiDBLite | consensus disorder prediction | 38 | 86 | - | - | |
| Lsi05g01456 | 397 | SMART | ring_2 | 342 | 380 | IPR001841 | - | |
| Lsi05g01456 | 397 | SUPERFAMILY | RING/U-box | 341 | 387 | - | - | |
| Lsi05g01456 | 397 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 341 | 381 | IPR045195 | - | |
| Lsi05g01456 | 397 | ProSiteProfiles | Zinc finger RING-type profile. | 342 | 381 | IPR001841 | - | |
| Lsi05g01456 | 397 | MobiDBLite | consensus disorder prediction | 1 | 86 | - | - | |
| Lsi05g01456 | 397 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 327 | 391 | IPR013083 | - | |
| Lsi05g01456 | 397 | PANTHER | MAHOGUNIN | 1 | 396 | IPR045194 | GO:0061630 | |
| Lsi05g01456 | 397 | MobiDBLite | consensus disorder prediction | 14 | 28 | - | - | |
| Lsi05g01456 | 397 | Pfam | Zinc finger, C3HC4 type (RING finger) | 340 | 386 | - | - | |
| Lsi05g01456 | 397 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED | 1 | 396 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g02901 | Lsi-Chr2:35237266 | Lsi05g01456 | Lsi-Chr5:22427884 | 3.05E-07 | dispersed | |
| Lsi03g02030 | Lsi-Chr3:31684303 | Lsi05g01456 | Lsi-Chr5:22427884 | 7.54E-92 | dispersed | |
| Lsi05g01456 | Lsi-Chr5:22427884 | Lsi05g01735 | Lsi-Chr5:24782512 | 1.13E-06 | dispersed | |
| Lsi05g01456 | Lsi-Chr5:22427884 | Lsi09g01232 | Lsi-Chr9:19773050 | 5.58E-08 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g01456 | - | - | cmo:103483745 | 690.263 |