Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01462 TATGAAGCCCCACTTCTAAGGAAGCTGGCAGATAAGGTTGCAGCTGCTGGGTTCTTTGTGGTTGCTCCTGATTTCTTCAAGGGAGATCCATATGTTCCAGATGATGCTAATAGGCCAATTCGAGTTTGGCTTCAAGATCATGGACCTGACAAGTCTTTCGATGATGGGAAGGCAGTAGTTGAAGCTTTGAAAAGCAAAGGCATTTCAGCAATTGGAGCTGCAGGCTTTTGCTGGGGTGGTGAGTATACTCATCTGTCCAAGGTTGTTGTTGAGCTTTCAAAGGTGGATTTGATTCAAGCAGCTGTGTTACTACATCCATCGTTGGTTACTGTCGATGACATCAAAGGTTTGTTTATAAGGGTTAAAGCTCCCATTTCGATACTAGGAGCCGAAATCGACCAAATATCTCCACCAGAACTCTTGAAACAGTTTGAAGAAGTCTTATCCACAAAGCCTGAGGTAGTCGATGGATTCGTAAAGATATTTCCAAAAGTTTCTCATGGATGGACAGTGAGGTACAATGTTGAGGATGAAGAAGCTGTGAAACGTGCAAATGAGGCTCACAGGGACTTGTTGGATTGGTTTACAAAGTACCTTAAGTAA 603 43.12 YEAPLLRKLADKVAAAGFFVVAPDFFKGDPYVPDDANRPIRVWLQDHGPDKSFDDGKAVVEALKSKGISAIGAAGFCWGGEYTHLSKVVVELSKVDLIQAAVLLHPSLVTVDDIKGLFIRVKAPISILGAEIDQISPPELLKQFEEVLSTKPEVVDGFVKIFPKVSHGWTVRYNVEDEEAVKRANEAHRDLLDWFTKYLK 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22484177 22487243 + Lsi05G014620.1 Lsi05g01462 663954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01462 200 PANTHER DIENELACTONE HYDROLASE 1 200 - -
Lsi05g01462 200 Gene3D alpha/beta hydrolase 2 198 IPR029058 -
Lsi05g01462 200 PANTHER ENDO-1,3-1,4-BETA-D-GLUCANASE-LIKE PROTEIN 1 200 - -
Lsi05g01462 200 SUPERFAMILY alpha/beta-Hydrolases 6 200 IPR029058 -
Lsi05g01462 200 Pfam Dienelactone hydrolase family 7 198 IPR002925 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01462 - - - csv:101211476 315.079
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01462 Lsi-Chr5:22484177 Lsi05g01463 Lsi-Chr5:22488913 5.88E-108 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g419 . . . . . . . . . . Cma06g01440 . Car06g01242 . . Cpe08g00235 . Bhi01g00866 Tan10g0900 Cmetu09g0387 . Hepe05g1515 . Lcy11g1494 . . . . . . . Cone14ag0814 Cone15ag0812 . Cone4ag0199 Lsi05g01462 . . Cme06g00652 . . . . . . . . . Cmo06g01442 . . . . . . . . . . . . . . Cla05g00584 Cam05g0642 Cec05g0651 Cco05g0646 Clacu05g0636 Cmu05g0604 Cre05g0673 . Csa03g01379 Chy06g00621 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002887 1 2 1 1 0 2 1 2 2 1 2 2 1 2 1 1 2 2 1 2 1 4 1 4 3 2 1 2 2 5 54