Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01466 ATGGATGGTGGGAGATCTCCGGCATGTGATCGGAACGACATTCGTTTGCAGATATCAGAAACTTGCAGTGGGAACACCACCATGTTTGAGCCGAGGGCCAGTATCACAATGAGAGAAAGTAGTAATGTGGATTTTGCATCACCATCAAAACCTGCGGTCCGTGCACCAGAGAAGAAGCTGACGCTCTTTGCTCTCCGGTTGGCTGTGCTTGAGAAAGCGGCAACAGGGCTGGGAACTCTTGGGTTCATCTGGGCAACTGTGGTTCTTCTTGGTGGTTTTGCTATAACATTAGATAAAACTGACTTTTGGTTCATCACTATTATTCTGTTGATTGAAGGAACTCGAATATTCAGCCGGAGTCACGAGCTAGAATGGCAGCACCAAGCAACATGGTCGATTGCTGATGCTGGTTTAAACAGCTTCCGGGCACTGAGGACCAGGTCCCACTTCCTGGTTGGGAAGATCAAAGCAACTTTCAAGTCAGTTCTTGTATTGGGAAAGAAAAGTCGAGGTCGAGAAATAAGAGGGATTTCAAATGCTAATAACCGAGGTATGTCAGAGCAGTCAAGGATGCCAACTCGGCAATGGAGCACATCAGATGTTCCTCTTTTGCCATATGCTCAATGGGTTTTCCTGTCAAAAAACATCAGTAAACTTCTCTATTGGCTTCAACTTCTATCTGCAACAGCTTGTGTGGTGCTCTCGCTAATGAAATTGATCAAACACAACTATGGCAATATAGCGAAGGGAGACACGGACAAGAGGAACAGGCGCGCTGCTCTCAGCATCTTCTATGGCTTGGCATTGGCAGAAGCTTTGTTGTTTTTAATAGAAAAAGCTTACTGGGAGTGGAAGGTTATCTTCCGGAAGTTATTGGAAAAGGTGAATAAAGAATGTGAATTGGGGCCTATGGGTATGATCTCAACAAAAAGATTCTTTTACGATGCATATTCAAGATGTGTCAATGGAAGCATTTTCGATGGTCTGAAAATGGATATGGTCTCTTTTGCAATGGAGCTCTTAGATTCAAGTTTTCCTGATGAGCAGCTCATCGGAGTGAGAATTCTTCGACAGTTTTCAATGAATCAGAGATTTTCTGATGACACGCTTGAAAAGATAGGGGTGAATTTTGCTGTTATAGAAAGATTAGTGGAGATGTTGAACTGGAAAGACCCACAAGAAGAAGAAATCAGACTTTCAGCTGCTGAAATACTGTCAAAACTAGCAGGAAAAAAGCAAAACTCATTAAGAGTTGCCGGGATACCTGGCGCCATGGAGTCAATATCATCTCTACTCCACAACGGTCGAAGCTCCCATGTTTCTGCAGATGAAATAAGTGAGAAGAAGATCATCCATGACCGTGCGAACTATGCATTCTGGACATTCAATCACTTGGGACTCGTCATTCTGAAAAAACTTGCACGAGATCACGATAACTGTGGTAAGATAGGAAACACAAGAGGCCTCCTGCCAAAGATCATAGATTTCACTCACGCAGAAGAAAGACTACTGAAAGACGAGCATGTTGCACAATCACAGATTCAAACAGTCAAAAGATCACTGCAGGTGGTGAAGATGCTGGCAAGCACGACAGGCACAACAGGAAAATTTCTCCGGAATGAGATTGCTGAGATAGTTTTTACAATCAGCAACATCAGGGATGTACTGCGATATGGCGATAAACATCCATCGCTTCAGAAACTGGGCATTGAAATCTTAACCAGTTTGGCACTGGACGAGGATGCAACAGAGAGCATCGGTCGTACCGGTGGTGTTTTAAAAGAACTGTTCAGAATTTTCTTTAACAAAGAGACGGGGGAGATCCATAATCATGCAAGGATAGCTGCTGGAGAAGCACTGGCGATGCTTGCATTGGATAGCGAAAGCAACTGTAATCGTATTCTGAAGCTGGAGGTGCAGGAAAAGCTGGTAACAACTTTGGAGGTTCCATTGCTTCGTGTGAATGCTGCAAGGATAATGAGAAATCTGTGCGTTTACAGTGGCGCAGAAGGTTTTAACAAGCTCAGAGGAGTTGGAGCTGCAGCTTCAACAGTAGTTCAAGCAATCAAATCAGAAGACCAAAAACTACAGGAAGTAATGATCGGACTAGCAGCCCAAATTTTAAAATTCACAACACCCCACGAAGCCGCCATCACATTCGGGAGGGCCGGAACGACGCAGGCCGAATTGGCAGCGACATTGGTCCAGATACTAAAGAAGCACAAAAATCCACCGACTAAAACGCCGCAGATTCGGCGGTTTGTAATAGAAATGGTGATTTGGATGATGAGGGAAAACACAGAGAACATACATTTCTTTGATGAATTAGGGATGGCGAAGGAGCTGGAGGCCGTCTTGGAGACCACTTCGGAGCTTGAAAGCTTCAATATCTTCTCCGGCACCGTCGGGCTGAGCCGCCACCGCATCACGATGCATTCGCTCGCTGAAATCGCATTGGGTCTCTTGGGAAGATGGTGA 2478 44.92 MDGGRSPACDRNDIRLQISETCSGNTTMFEPRASITMRESSNVDFASPSKPAVRAPEKKLTLFALRLAVLEKAATGLGTLGFIWATVVLLGGFAITLDKTDFWFITIILLIEGTRIFSRSHELEWQHQATWSIADAGLNSFRALRTRSHFLVGKIKATFKSVLVLGKKSRGREIRGISNANNRGMSEQSRMPTRQWSTSDVPLLPYAQWVFLSKNISKLLYWLQLLSATACVVLSLMKLIKHNYGNIAKGDTDKRNRRAALSIFYGLALAEALLFLIEKAYWEWKVIFRKLLEKVNKECELGPMGMISTKRFFYDAYSRCVNGSIFDGLKMDMVSFAMELLDSSFPDEQLIGVRILRQFSMNQRFSDDTLEKIGVNFAVIERLVEMLNWKDPQEEEIRLSAAEILSKLAGKKQNSLRVAGIPGAMESISSLLHNGRSSHVSADEISEKKIIHDRANYAFWTFNHLGLVILKKLARDHDNCGKIGNTRGLLPKIIDFTHAEERLLKDEHVAQSQIQTVKRSLQVVKMLASTTGTTGKFLRNEIAEIVFTISNIRDVLRYGDKHPSLQKLGIEILTSLALDEDATESIGRTGGVLKELFRIFFNKETGEIHNHARIAAGEALAMLALDSESNCNRILKLEVQEKLVTTLEVPLLRVNAARIMRNLCVYSGAEGFNKLRGVGAAASTVVQAIKSEDQKLQEVMIGLAAQILKFTTPHEAAITFGRAGTTQAELAATLVQILKKHKNPPTKTPQIRRFVIEMVIWMMRENTENIHFFDELGMAKELEAVLETTSELESFNIFSGTVGLSRHRITMHSLAEIALGLLGRW 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22518848 22522041 + Lsi05G014660.1 Lsi05g01466 663958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01466 825 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 18 822 - -
Lsi05g01466 825 SUPERFAMILY ARM repeat 337 789 IPR016024 -
Lsi05g01466 825 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 18 822 - -
Lsi05g01466 825 Gene3D - 375 823 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01466 - - - csv:101204674 1516.52
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g414 . . . . . . . . . . . Cma14g01669 . Car14g01504 Sed02g1279 . Cpe03g01409 Bhi01g00871 Tan10g0905 Cmetu06g2408 . Hepe05g1511 . Lcy11g1487 . . . . . . . . . Cone7ag0208 Cone4ag0197 Lsi05g01466 . . Cme06g00658 . Blo07g00202 Bda11g00555 . . Bpe13g00628 Bma02g00703 Bma06g01534 . . Cmo14g01716 . . . . . . . . . . . . . Cla05g00588 Cam05g0646 Cec05g0655 Cco05g0650 Clacu05g0640 Cmu05g0609 Cre05g0677 . Csa03g01383 Chy06g00626 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006296 1 1 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 1 1 1 37