Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01467 ATGGCTCAGATTTTAGCTCCATCCACTCAATGGCAACTGAGAACTAAACAGACTTTAACGAGTTCAAGCCCCATTACTCCTAAGATGTGGAGTTCCATAATTCTGAAGCAGAACAAGAAAGGAGCAGTGAAAAGCTCTGCAAAATTCAGAGTCTTGTCTGTCAAATCTGAAGGCGGCACTATCAACAGAATGGAAGATCTGCTAAATCTGGACGTCACTCCATATACCGACAAGATTATTGCTGAATATATCTGGATTGGAGGATCTGGCATTGATTTGCGTAGTAAGTCAAGGACTATATCAAAGCCTGTTGAACATCCATCTGAGCTTCCCAAGTGGAACTATGATGGATCTAGTACTGGGCAAGCACCTGGAGAAGACAGTGAAGTCATTCTATATCCTCAAGCAATCTTCAAGGATCCCTTCCGTGGCGGCAACAACATTTTGGTGATTTGTGATGCATACACACCAGCAGGCGTGCCCATCCCTACAAACAAACGACACAGAGCTGCTGAGATTTTCAGCAACAAGAAAGTTGTGGATGAAATTCCTTGGTATGGTATAGAGCAAGAGTACACCTTACTTCAGACAAATGTGAAGTGGCCTTTAGGTTGGCCAGTTGGAGCATATCCAGGTCCTCAGGGCCCTTATTATTGTGGTGTTGGAGCTGATAAGTCCTTTGGTCGAGACATATCAGATGCCCACTACAAGGCTTGTTTATACGCCGGTATCAACATTAGTGGCACCAATGGAGAAGTTATGCCTGGCCAGTGGGAGTATCAAGTTGGTCCTAGTGTTGGTATCGAAGCTGGAGATCATATTTGGTGCTCTAGATACATTCTTGAGAGGATCACTGAGCAAGCTGGGGTAGTTCTCTCACTTGATCCAAAACCAATTGAGGTAGCTAGCTTAAACTGTTATGGTGACTGGAATGGAGCTGGATGCCACACCAATTACAGTACAAAGAGCATGCGAGAGGAAGGAGGCTTTGAAGTCATAAAGAAGGCAATTCTGAATCTGTCTCTTCGCCACAAGGAGCATATCAGTGCCTATGGAGAAGGAAATGAGAGAAGGTTGACAGGAAAGCACGAAACAGCAAGTATCAACACCTTTTCCTGGGGAGTGGCTAACCGTGGCTGTTCAATCCGTGTGGGACGTGACACTGAGAAGCAAGGCAAAGGTTATTTGGAAGACCGACGTCCCGCTTCAAACATGGACCCATATGTCGTGACCTCACTGCTAGCAGAAACAACCTTACTGTGGGAGCCAACACTTGAAGCCGAAGCACTGGCTGCTCAGAAACTGTCATTGAAGGTCTAA 1320 45.61 MAQILAPSTQWQLRTKQTLTSSSPITPKMWSSIILKQNKKGAVKSSAKFRVLSVKSEGGTINRMEDLLNLDVTPYTDKIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPAGVPIPTNKRHRAAEIFSNKKVVDEIPWYGIEQEYTLLQTNVKWPLGWPVGAYPGPQGPYYCGVGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWCSRYILERITEQAGVVLSLDPKPIEVASLNCYGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKQGKGYLEDRRPASNMDPYVVTSLLAETTLLWEPTLEAEALAAQKLSLKV 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22525349 22530493 + Lsi05G014670.1 Lsi05g01467 663959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01467 439 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 163 439 IPR008146 GO:0004356|GO:0006807
Lsi05g01467 439 Pfam Glutamine synthetase, catalytic domain 228 412 IPR008146 GO:0004356|GO:0006807
Lsi05g01467 439 Pfam Glutamine synthetase, beta-Grasp domain 82 157 IPR008147 GO:0004356|GO:0006542|GO:0006807
Lsi05g01467 439 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 164 423 - -
Lsi05g01467 439 PANTHER GLUTAMINE SYNTHETASE 61 422 - -
Lsi05g01467 439 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 79 159 IPR008147 GO:0004356|GO:0006542|GO:0006807
Lsi05g01467 439 SUPERFAMILY Glutamine synthetase, N-terminal domain 78 162 IPR036651 GO:0004356|GO:0006542|GO:0006807
Lsi05g01467 439 SMART Gln_synt_C_2 163 418 IPR008146 GO:0004356|GO:0006807
Lsi05g01467 439 SUPERFAMILY Glutamine synthetase/guanido kinase 164 420 IPR014746 GO:0003824
Lsi05g01467 439 Gene3D - 61 163 IPR036651 GO:0004356|GO:0006542|GO:0006807
Lsi05g01467 439 ProSitePatterns Glutamine synthetase signature 1. 115 132 IPR027302 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01467 K01915 glnA, GLUL; glutamine synthetase [EC:6.3.1.2] - csv:101212441 867.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00348 Lsi-Chr5:4417114 Lsi05g01467 Lsi-Chr5:22525349 0 dispersed
Lsi05g01467 Lsi-Chr5:22525349 Lsi09g00943 Lsi-Chr9:12074783 1.68E-126 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g412 . . Bda03g01264 . . . Bma04g01174 . . . . Cma14g01668 Car06g01245 Car14g01502 Sed02g1281 Cpe08g00232 Cpe03g01408 Bhi01g00873 Tan10g0907 Cmetu06g1518 . . . . . . . . . . . . . Cone7ag0205 Cone4ag0196 Lsi05g01467 . . Cme06g00659 . . . Bda13g00143 . . . . . Cmo06g01445 Cmo14g01714 . . . . . . . . . . . . . . . . . . . . . Csa03g01384 Chy06g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000333 5 5 3 4 4 4 2 4 4 4 4 4 7 3 4 8 4 8 7 4 4 4 2 4 4 3 4 9 5 5 136