Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01470 ATGGATCTCTTTCCCGTCTTCTCCGGCGACGGAGCGTCGGAACAGTCCGATTCCGAGGAGGAACATGAGGACGTCGGTTCGGCTTCTAATCTATCCAATCCGAGTACCGGTTGGAGCTTCGGCGGCCTGATTAAGACTCTCGCGACTAAGTCGGAATCAGTAATTTCGAACTACCGCCGTGATCTTGAGGAATTAGGATCCGGATTGAGGATGGAGACGTCGGTGATTCGAGAAGTCGCATCGCGTGCCGTGAAGGATCTTCCGACGACGCTCGATGTCGGTGCGTCCGTTGCGCAGGAATCGCTGGAGTCGGTCGGCCAAGCTATAGACGATATCGGAAACGCCGTCTGGAAATCGACGTCGAAGATCATCTCACATGGTAGGGATACGTTTTTAGCTTCTGATTTTGTTTCTGAAAATCATGAAAATAGCAGCGATGTTGTTCTTTCATCAAATCAATTAGGCAAAACTAGAAATCTCGAATTCAAACAGTATAATAGGTTCAATACGCAATTGATTGCGATTCAACGAGACCTAAATACCTATTTGGAGGAACCTAAGGATATAGAAAATTACAAGAATTGGAAATTAGGGTTCGTATTGGAAGACAAGGAAGATGAAATTGAGGATTTGGTTAAAGAGAGTGAAGATGTTCGGGAAACATATCGGACTGTAGTTCCAAGCACAATCAGCCATGATATCTTCTGGAGTAGGTATTTTTACAGGCTTCACAAGCTAAAGCAAGCAGAAGAAGCCAGAGTTAAGCTTGTAAAGAGAGCAATCTCTGCAGAAGATGAGGAAGATTTGAGTTGGGATGTTGAGGAAGATGATGATAAAGAAGGGAATATTGAATTGCAATCAAAGGGTGAATCTAGTGGAGCTCTCAGTAGTGAGAAAAGAGATAGTGACAGTTCAGAGAGTGCCAAAACAGGAGAGGGAAATGTGAAGATTGATGATAGCTTGGAGAAAATGGCTGTTTCTGAAAAAATGGCTGCAGATGGAAGAGGAGACAGTGGCGATTCTTGCAAAGACAGTGACATTTCAATAATTTCCAGTCAGGCTGGGGAAGAAGAACTTGGATGGGATGAAATTGAAGACATTGGAACCATTGAAGAGGCCAAAGGTAACATTTCTGCTTCTAGCAGTGTACAAAAAATTGGTTTGAACAAGAGGTTGAGTATGGCAGAGGAAGAGGAAGATCTGAGTTGGGAAATTGAGGATGAAGATGAACCTACTAAATCATGA 1245 43.69 MDLFPVFSGDGASEQSDSEEEHEDVGSASNLSNPSTGWSFGGLIKTLATKSESVISNYRRDLEELGSGLRMETSVIREVASRAVKDLPTTLDVGASVAQESLESVGQAIDDIGNAVWKSTSKIISHGRDTFLASDFVSENHENSSDVVLSSNQLGKTRNLEFKQYNRFNTQLIAIQRDLNTYLEEPKDIENYKNWKLGFVLEDKEDEIEDLVKESEDVRETYRTVVPSTISHDIFWSRYFYRLHKLKQAEEARVKLVKRAISAEDEEDLSWDVEEDDDKEGNIELQSKGESSGALSSEKRDSDSSESAKTGEGNVKIDDSLEKMAVSEKMAADGRGDSGDSCKDSDISIISSQAGEEELGWDEIEDIGTIEEAKGNISASSSVQKIGLNKRLSMAEEEEDLSWEIEDEDEPTKS 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22539354 22540598 - Lsi05G014700.1 Lsi05g01470 663962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01470 414 Coils Coil 246 266 - -
Lsi05g01470 414 MobiDBLite consensus disorder prediction 1 35 - -
Lsi05g01470 414 MobiDBLite consensus disorder prediction 395 414 - -
Lsi05g01470 414 Pfam BSD domain 195 251 IPR005607 -
Lsi05g01470 414 SUPERFAMILY BSD domain-like 165 253 IPR035925 -
Lsi05g01470 414 SMART wurzfinal6 195 247 IPR005607 -
Lsi05g01470 414 Gene3D BSD domain 156 257 IPR035925 -
Lsi05g01470 414 MobiDBLite consensus disorder prediction 294 342 - -
Lsi05g01470 414 ProSiteProfiles BSD domain profile. 195 247 IPR005607 -
Lsi05g01470 414 PANTHER SYNAPSE-ASSOCIATED PROTEIN 1 408 - -
Lsi05g01470 414 Coils Coil 201 221 - -
Lsi05g01470 414 PANTHER PROTEIN, PUTATIVE-RELATED 1 408 - -
Lsi05g01470 414 MobiDBLite consensus disorder prediction 267 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01470 - - - csv:101204914 612.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02319 Lsi-Chr2:29813387 Lsi05g01470 Lsi-Chr5:22539354 1.10E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g407 . . . . . . . . . . Cma06g01446 Cma14g01667 Car06g01248 Car14g01501 Sed02g1283 Cpe08g00229 Cpe03g01407 Bhi01g00879 Tan10g0910 Cmetu01g2218 . Hepe05g1507 . . . . . . . . . . . Cone7ag0200 Cone4ag0193 Lsi05g01470 . . Cme06g00662 . . Bda11g00552 . . Bpe13g00632 . Bma06g01531 . Cmo06g01448 Cmo14g01712 . . . . . . . . . . . . . Cla05g00591 Cam05g0650 Cec05g0658 Cco05g0654 Clacu05g0643 Cmu05g0612 Cre05g0680 . Csa03g01387 Chy06g00630 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009552 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 0 1 1 1 1 2 33