Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01472 ATGGGTCGTTACCCGCCGTCTTCCGACGGCGATATTACCCAATTTGGTGATGCCCCGCCGTGTAGTTTAAATGGAAAACATATACTAACCGGAAGGTCATTGGAGTCTGTTCGTGTCCCTTCTCACGACTACAATTTGGAGTATTCGCTCTTGACCCAGCGTGGCTACTATCCTGATTCTCCTGATAAAGAAAACCAAGATAGTTTCTGTGTTAGTACACAAATTCGAGGTAACCCGAATATCCATATCTTTGGTGTTTTTGATGGTCATGGTCAATTTGGAATGCAGTGTTCGAATTTTGTTAAGGATAGGGTTGTGCAACTACTGTGTAATGATTCAAGAATGTTGGAAGATCCTGTTAAAGCTTATAATTCGGCATTTTTGACTGCGAATGATGAATTGCATAATAGTGAGATTGATGATTCCATGAGTGGTACAACAGCTATTACTGTTCTTGTTATTGGGAATACTCTTTACGTTGCGAATGTGGGTGATTCGAGGGCGGTAGTGGCTGTTAAAAATGGAAATCGAATTGTGGCTGAGGATATGTCCCATGATCAAACACCATTTAGGAAGGATGAGTGTGAGAGAGTAAAGCTAGCTGGGGCTAGGGTTTTGACCATTGATCAAATTGAGGGGCTTAGAGATCCGGATATTCAAGTATGGGGTGATGAGGAAAGTGAGGGAAATGATCCTCCTCGATTGTGGTTTCCTAATAGTTTGTATCCTGGTACTGCATTTACACGGAGTGTAGGAGACAGTACAGCGGAGAAGATTGGTGTCACTGCTGTCCCTGAGGTTTCAGTTGTTCAACTGACTCAAAATCATCTTTTCTTTGTCGTTGCAAGCGATGGAGTTTTCGAGTTCCTTACAAGTCAAGCTGTTGTTGATATGATTCTAGAATGGACTTCACATTTAGTCTTTCAATGTTTGATGCTTGCTCTGCTTCTTTTTCTTTGTTCTTTGTTTGTTTCTTATTTTAAAACAAGAAACAAGAAAATTTTATGTAAGAGACTAATGTGCTTCTCTTTCTTTGTTCTATCTTCTGTTTTCTCTTGGAATATTTCATGTGATAGAAAGGCTGCAAGGTATTCCGATCCACGGGATGCATGCTCTGCTATTGCTGGAGAATCATATAAGCTATGGTTGGAGCATGAAAACCGGACAGATGATATAACAATCGTCATCGTTCACATCAAAGGCCTCTCTAATTCAGGCGGCGTTGGAACCGTTGGGCTGAATGGGGTCCGCATAAGGCATTCAAATTCAGAGCGGGGAACCTCTGAGATATCAGCTACCACTGGAAGTTCAGAGGCCTTTCGCTCCTTCAGAAGTGATTTCTCAGATCTGCATGTCTCTCAGCATGTGGGTTTGATTAACAGGAGCACGGCAATTGTCGTTCCATCTCCTGTGCAGCACCGACCATTAGAAGTGGTGAGTATTTTGATCCCTTCCTTGCCACATTCACTACTATTGCATTATTGA 1485 42.15 MGRYPPSSDGDITQFGDAPPCSLNGKHILTGRSLESVRVPSHDYNLEYSLLTQRGYYPDSPDKENQDSFCVSTQIRGNPNIHIFGVFDGHGQFGMQCSNFVKDRVVQLLCNDSRMLEDPVKAYNSAFLTANDELHNSEIDDSMSGTTAITVLVIGNTLYVANVGDSRAVVAVKNGNRIVAEDMSHDQTPFRKDECERVKLAGARVLTIDQIEGLRDPDIQVWGDEESEGNDPPRLWFPNSLYPGTAFTRSVGDSTAEKIGVTAVPEVSVVQLTQNHLFFVVASDGVFEFLTSQAVVDMILEWTSHLVFQCLMLALLLFLCSLFVSYFKTRNKKILCKRLMCFSFFVLSSVFSWNISCDRKAARYSDPRDACSAIAGESYKLWLEHENRTDDITIVIVHIKGLSNSGGVGTVGLNGVRIRHSNSERGTSEISATTGSSEAFRSFRSDFSDLHVSQHVGLINRSTAIVVPSPVQHRPLEVVSILIPSLPHSLLLHY 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22555534 22560175 + Lsi05G014720.1 Lsi05g01472 663964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01472 494 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Lsi05g01472 494 ProSiteProfiles PPM-type phosphatase domain profile. 47 399 IPR001932 -
Lsi05g01472 494 Gene3D - 41 401 IPR036457 -
Lsi05g01472 494 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 26 486 - -
Lsi05g01472 494 SUPERFAMILY PP2C-like 36 401 IPR036457 -
Lsi05g01472 494 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 26 486 - -
Lsi05g01472 494 CDD PP2Cc 63 302 IPR001932 -
Lsi05g01472 494 Pfam Protein phosphatase 2C 73 304 IPR001932 -
Lsi05g01472 494 SMART PP2C_4 39 397 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01472 Lsi09g01376 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01472 Lsi-Chr5:22555534 Lsi04g01437 Lsi-Chr4:22091024 4.36E-27 dispersed
Lsi05g01472 Lsi-Chr5:22555534 Lsi09g01376 Lsi-Chr9:21780871 5.24E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01472 - - csv:101212684 572.392