Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01473 ATGTCATATCAGGGTTTTGGCAAGGCTTCCGGACCAAGCGCACCGCCGAAACTGCAACATTCTTTCGGAAATTCAGCAATTCCTGATTCAGTTTCTCCCCTACGCGATTCTGGCCAACATGAGGTATTGGGCAGTAGAGTTCAGTCGCGTCCTATGGCTTTTCAAACCACTGGTACTGCTTCAAGTCTTCATCATCAATATCATAGGCCTGTTTCACCTTCTCCTACATTTGAGGATCAGCCAAAGGTGCGAGGAATTCTTCCCACCTCACAAGCTTATCAAGTTCGATCCCCTTCAGAACGATCTCATGATCACAATACAAATATTCAAACTGAATTTGGTAATGTTCAAGAACCAAAGAGAACCAAATCTCCAGAGAAACCATTTGTGAGTCTTCGGTCTGCACAGACTAATTTGCAAAGGCCCTCTACCTCTCCTCCTAGATCATTTTCTAGGTCAAATGCTCATGAAGTTGTGGGTTCCATGAGGAATATTGATGCTGAATCCATAGCAACTTGGTCCCCTAGTGCCCCGGTTCCCAAAAGAACAAGGTTGCCTACTTTGCCATCATCAGATCAAGTCTCTGGTGGCAATTCTCACCCTACTCATGAGGACACTGAACGAGAAAGGTTAGCTAAGGCAAAGAGACTTGCTCGCTTTAAGGATGAATTAGATGACGTTACACACAACAAATTGGGTAGTGTGGATGTAAGGGATAATACAAATAGAAATGAACATTCAACAACAGAAAGGGACAAATACATGTCAAGTCAATCTTTGGAGTCATCAAGAAATTTGGCTCATGGAAATTCGATGCCTGATTATGAAGCTTTGGAATCTTCAAGCATAATAATTGGACTCTGCCCAGATATGTGTCCAGAGTCAGAGAGGGGTGAGCGAGAAAGGAAAGGTGATCTTGACCATTATGAGCGGTTGGATGGGGATAGAAACCACACTAGCAAATTGCTTGCAGTTAAGAAGTATACCAGAACAGCTGAGCGGGAGGCTAATCTAATAAGGCCTATGCCAGTTTTGCTGAAAACGATCGATTATTTGCTGGATTTGTTAAGTCAACCCTATGACGAAAAGTTTTTAGGAATATATAACTTTTTATGGGATAGGATGCGAGCCATTCGCATGGATCTGAGAATGCAACATCTTTTTAATGAAAATGCCATTACGATGCTGGAACAGATGATTCGTCTTCACATAATTGCAATGCATGAGTTATGCGAATTCTCAAAAGGAGAAGGCTTTGCTGAGGGATTTGATGCTCACCTTAACATTGAACAAATGAACAAAACATCGGTGGAATTGTTTCAAATGTATGATGATCACAGAAAGAGAGGCATTACTGTGCCCTCTGAAAAAGAATTTCGAGGTTATTATGCACTTCTCAAGCTGGACAAGCATCCTGGATATAAAGTTGAACCTGCAGAGCTCTCACTAGATCTTGCAAAGATGACTCCTGAGATGCGTCAGACTGCAGAAGTCAAATTTGCCCGTGATGTTGCTAGAGCTTGTAGGACAAGTAACTTTATTGCATTCTTTCGGCTTGTGAGGAAAGCGAGTTATTTACAAGCATGCTTAATGCATGCTCACTTTGCAAAGGCTCTTGCATCATTGCACTCTGGCGTTCAGAATAACCAAGGACTGCCAATTGCCCATGTCCGTAAGTGGATTGGGATGGAGGAAGAAGATATTGAAGGCCTTTTAGAGTATCATGGCTTTTCTATTAAGGTATTTGAAGAGCCTTATATGGTTCGAGAAGGTCCATTTCTTAATAGCGACAAAGACTTTGCTACCAAGTGTTCAAAACTTGTTCACATGAAGAGGTCAAGAATGATAGTAAACGACGTCTCACCGAAGAGTAAAAATGAATACTTGATCAATGGTGCTACTGAAAAGATCCCATTGACAAGGAAGACTAAGAATGAATACTTGATCTCTGGTCCTACTAAACAGATCCCATTGACAAGGACTAAGAAGGAATCAAAGACATTTTCTTTTGAAAAGATTAGTTCTCCCCGTCCCATATCAACTGAAAAAGCAAGTTCCATGCATGAAACAGATGAAGAAATGACTGAATTTGATGATCAGTTGATTCCAGTTGATCACAAGCAAGTGCAACCGATGATTGAAACATCGGAAGTTCGCCAAGTGCATGAATATAACCATGAGGCGAATGGTGCTCTCCTACAGTCTGGTCCCAGATCGTGTGAACCATTGAGGACTGAAGTTAAATTTGTTGGCAATCAAGGCTATGATGGTCTTTTCATGACCTCTCCAGTTAGAAAAAATTCTGCTAGGATGGGATTGTCTTTACCACTTGTATCAGACGTGTCGCTTCAAAAGATATCTGCTTGTGGGTATAATGATAATGTAATTAGAAGCGTTGAACCCCAGAGCATAATCAACAATGTGATTGAAGATGAAGAAATTTTGAATGCTACTCAGGAAAATAAACATGATATTGTTACAGAAAGTTGTCCGGATGAAGAAATTGCAAATGCAAGACTCAAGTTGATCTTAAGGTTATGGAGACGCCGAGCTTTAAAGAGAAAACAATTATGTGAACAAAGATTATTAGCGGCTAAAGCTGCATTTAATGCATTGTCAGTGGGACCACCAATCCAATTGAATAGTCATAAAGTTAAAAGTATTGGTATATTCGACATTGATCACGTTGTGAGAGAAAGATGGAAAAGGCAAAAACTGTCATGGTCCATAGTTAATGTTTCAGAAGTGGTAGCTAGCATTCTAAGCAGAAGGAATGTGGATGGGAAGTGCATTTGCTGGAAACTTGTTGTCTGCTCTCAAAGGGCCCGGGATTCTCATTTTCCAGCAGGTTCCTGGTTGCTTTCGAAGCTTATGCCCTCTGAAGCTAATGATCTAGTTTTCTCATCTTCCTTTCTTTCCATTTGGAAGAGTTGGCTCTCAGGCGAAACTGGTGTGGATTTAAGTTGTTTCTTGTCCATAGTTAAACATGCAAATTTTGATAATCTTCCAGAGACAGTGCATGGGGCAAGTGCAATCTTATTTGTTGCAACTGAAAGCATCCCTCTAGATCTTCAAAGAGCCCAACTCCACAAGCTGCTGGCGTCAATACCTTCTGGATCTTGTTTGCCCCTTCTGATTTTGAGTGATTTTCATGATGAGGTCTCTGCCTCACTTGCAAACAAACTCGACTTATATGATATTGATAAATCAAGGATACACAGTTTTCAGGTCGTTTCACTCTTGGATAACCCTCATTTGAGGCATTTGGGATTTTTCAGTGATGAGAAACTCAAGGAGGGATTGAAGTGGCTAGCAAATGAATCACCATCACAACCTGTTCTTCATCGAGTCAAAGTGCATGACTTGATTATTTCCCACTTAGATTCGTCTATGGAGGTGCTTGACTCTATGAATGAAAAAGACGTTTCTCCGAACCACTGTATCTCAACATTTAATCTAGCCTTGGATCAGTCCGTTGCGGATATTACAGCTGCTGTCAAGGCAAATCCTTCAAACTGGCCTTGTCCTGAGATCGCTCTGTTGAAGTCTTGTAACGAGCAGGCGTTTACAACCGATGCTTTGCCTCCTGTAGGATGGAGTTTGGTAGACAATGTTGAACCTCTTAAGCAGGCTTTGATGGACCTTAAGCTTCCAACTTTTCCTGATATGTCCTGGTTGACCAGAGGCTCAAATACGATCAAAGAGATACCTACCATAAGAGATAACCTAGAAAGTTGCTTGAGATGTTATCTGACTCAAACTAGTGAGATCATGGGACAACAACTTGCATTGGAAGAGGCTTATATAATGCTCCAAAAATGTGCTAAACTTGAGCTTCATAATTTCAACTATTTCATTGTTCCACATTGGGTGACGATTTTTCGACGGATTTTAAATTGGAGGTTGAGGTATTTTCCCGGCAGGTCCTCTTATGTTCATATTGTGGATTGCTGCCATGGTGCGTCTGTATCGAGTAGCATTAGGCTCGAAAGTAGGGAACCTCCATCATATCGTCCTAACCAACCACTTTTAGATGAAGTAATTGAAGTAGCTTGCAGTTCCCTCTCAATTGATCAGGAGAGACACTTATCAGAAGCTCATCAACCTCTTGCAACCATAACCTCAAATCGTAGGCCTCGTGAAGTTGTCGTTGCAACAATCGATTTTGCAAATGATGATAGCAATAGCACTCGACAGATCGGTTTTGTTAGTTCCGAGAATGTACCTAATTCGGGTCGGGAACTAAATTGTACAGGTAAAGAACTAGTCGTCAGTGATACAGGATATTCAGAAGCAGCAAGACTTAAGGAGTTGTTGGATCAGTGTAACAAACGACAGGATGCCATAGAAAAAATGTTGTCTATTTATTTCTAA 4374 41.13 MSYQGFGKASGPSAPPKLQHSFGNSAIPDSVSPLRDSGQHEVLGSRVQSRPMAFQTTGTASSLHHQYHRPVSPSPTFEDQPKVRGILPTSQAYQVRSPSERSHDHNTNIQTEFGNVQEPKRTKSPEKPFVSLRSAQTNLQRPSTSPPRSFSRSNAHEVVGSMRNIDAESIATWSPSAPVPKRTRLPTLPSSDQVSGGNSHPTHEDTERERLAKAKRLARFKDELDDVTHNKLGSVDVRDNTNRNEHSTTERDKYMSSQSLESSRNLAHGNSMPDYEALESSSIIIGLCPDMCPESERGERERKGDLDHYERLDGDRNHTSKLLAVKKYTRTAEREANLIRPMPVLLKTIDYLLDLLSQPYDEKFLGIYNFLWDRMRAIRMDLRMQHLFNENAITMLEQMIRLHIIAMHELCEFSKGEGFAEGFDAHLNIEQMNKTSVELFQMYDDHRKRGITVPSEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPEMRQTAEVKFARDVARACRTSNFIAFFRLVRKASYLQACLMHAHFAKALASLHSGVQNNQGLPIAHVRKWIGMEEEDIEGLLEYHGFSIKVFEEPYMVREGPFLNSDKDFATKCSKLVHMKRSRMIVNDVSPKSKNEYLINGATEKIPLTRKTKNEYLISGPTKQIPLTRTKKESKTFSFEKISSPRPISTEKASSMHETDEEMTEFDDQLIPVDHKQVQPMIETSEVRQVHEYNHEANGALLQSGPRSCEPLRTEVKFVGNQGYDGLFMTSPVRKNSARMGLSLPLVSDVSLQKISACGYNDNVIRSVEPQSIINNVIEDEEILNATQENKHDIVTESCPDEEIANARLKLILRLWRRRALKRKQLCEQRLLAAKAAFNALSVGPPIQLNSHKVKSIGIFDIDHVVRERWKRQKLSWSIVNVSEVVASILSRRNVDGKCICWKLVVCSQRARDSHFPAGSWLLSKLMPSEANDLVFSSSFLSIWKSWLSGETGVDLSCFLSIVKHANFDNLPETVHGASAILFVATESIPLDLQRAQLHKLLASIPSGSCLPLLILSDFHDEVSASLANKLDLYDIDKSRIHSFQVVSLLDNPHLRHLGFFSDEKLKEGLKWLANESPSQPVLHRVKVHDLIISHLDSSMEVLDSMNEKDVSPNHCISTFNLALDQSVADITAAVKANPSNWPCPEIALLKSCNEQAFTTDALPPVGWSLVDNVEPLKQALMDLKLPTFPDMSWLTRGSNTIKEIPTIRDNLESCLRCYLTQTSEIMGQQLALEEAYIMLQKCAKLELHNFNYFIVPHWVTIFRRILNWRLRYFPGRSSYVHIVDCCHGASVSSSIRLESREPPSYRPNQPLLDEVIEVACSSLSIDQERHLSEAHQPLATITSNRRPREVVVATIDFANDDSNSTRQIGFVSSENVPNSGRELNCTGKELVVSDTGYSEAARLKELLDQCNKRQDAIEKMLSIYF 1457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22562656 22573405 - Lsi05G014730.1 Lsi05g01473 663965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01473 1457 MobiDBLite consensus disorder prediction 253 269 - -
Lsi05g01473 1457 MobiDBLite consensus disorder prediction 169 210 - -
Lsi05g01473 1457 PANTHER SAC3 FAMILY PROTEIN B 72 1457 - -
Lsi05g01473 1457 MobiDBLite consensus disorder prediction 186 200 - -
Lsi05g01473 1457 Pfam SAC3/GANP family 291 580 IPR005062 -
Lsi05g01473 1457 MobiDBLite consensus disorder prediction 17 32 - -
Lsi05g01473 1457 MobiDBLite consensus disorder prediction 233 273 - -
Lsi05g01473 1457 Coils Coil 1432 1452 - -
Lsi05g01473 1457 Gene3D - 334 633 - -
Lsi05g01473 1457 MobiDBLite consensus disorder prediction 129 154 - -
Lsi05g01473 1457 MobiDBLite consensus disorder prediction 49 69 - -
Lsi05g01473 1457 MobiDBLite consensus disorder prediction 1 154 - -
Lsi05g01473 1457 PANTHER 80 KDA MCM3-ASSOCIATED PROTEIN 72 1457 IPR045107 -
Lsi05g01473 1457 MobiDBLite consensus disorder prediction 233 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01473 K23719 SAC3; nuclear mRNA export protein SAC3 - csv:101205161 2380.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00759 Lsi-Chr4:7068696 Lsi05g01473 Lsi-Chr5:22562656 5.03E-41 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g400 . . . . . . . . . . . Cma14g01664 . Car14g01497 Sed02g1285 . Cpe03g01404 Bhi01g00884 Tan10g0912 Cmetu10g1725 . Hepe05g1504 . Lcy11g1479 . . . . . . . . . Cone7ag0196 Cone4ag0189 Lsi05g01473 . . Cme06g00665 Blo02g00561 . . . . . . . . . Cmo14g01708 . . . . . . . . . . . . . Cla05g00594 Cam05g0654 Cec05g0662 Cco05g0658 Clacu05g0647 Cmu05g0616 Cre05g0684 . Csa03g01390 Chy06g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009906 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 33