Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01477 ATGTCCTCCTTAATGCATGGATCACTGCTGCATACTATAGCAGACTGTGATCAAGGATTGTTGAGGAGGGGAAAGTACCATTTGGGTCACACCCATCTTCTCAAAGAAAAACATTCACCTTTAAGGACAAATAGGAGTGGTAGAAGTAAAGGTATTTGCTGCCAAGACTTGCATATCAGTAGCCCAAAGCCAGAGAGACATGAGCCTCCCAACCGTCACGGTTCGAGAGCCGACGCGGTCCTTAGTCCTGTAATACCTACTACCAAAAAGAGAGTATTTACTTTTGGAAAAGGAAGGAGTGAGGGTAACAAGAGCATGAAGTCCTTGTTGGGAGGGAAGGGAGCAAACCTTGCAGAGATGGCGAGCATTGGGTTGTCCGTTCCGCCTGGACTCACCATCTCAACTGAAGCATGCCAAGAGTACCAGCAAAATGGAAATAGATTACCAGATGGCTTGTGGGAAGAGATATTGGAAGGCTTGGAAAGTGTTGAAAAGGACATGGGAGCTGTTCTTGGAGATCCTTCAAAGCCTCTCCTTCTCTCGGTTCGGTCTGGTGCTGCTATCTCAATGCCTGGAATGATGGATACTGTCCTTAACCTTGGACTAAACGACGAAGTGGTTGCTGGATTAGCTGCCAAAAGTGGAGAGCGCTTTGCGTACGACTCTTATAGGCGCTTTCTAGACATGTTTGGAAATGTTGTGATGGGCATTTCACATTCTTTGTTTGAGGAAAAGTTGGAAAACTTGAAAATTGCAAAAGGAAAGGCACTAGATACTGACTTAACCGCCTCCGATCTTAAGGAGCTTGTGGAACAGTACAAGGATGCTTACGTCGAATCTAAGGGTGAAACGTTTCCTTCAGACCCAAAGCAGCAGTTGCAGTTAGCTGTCAAAGCAGTTTTCAACTCTTGGGATAGTCCAAGGGCCAACAAATATCGAAGCATCAATCAAATTACCGGGTTGAAGGGAACTGCTGTGAACATTCAATCCATGGTGTTTGGAAACATGGGACATACTTCTGGGACAGGAGGTGAGGACGTAGTTGCCGGGATACGAACGCCTGAAGACCTCGACACCATGAAAGATTGCATGCCTGAAGCTTACAAGGAGCTGGTTGAGAACTGTGAAATTTTAGAGAGACATTACAAAGACATGATGGATATTGAGTTCACAGTCCAAGAAAATAGGCTATGGATGTTGCAATGTCGTTCTGGAAAACGCACGGGTAAAGGTGCTGTGAAGATAGCTGTAGATTTGGTGAATGAAGGACTTGTTGACACTCGTACTGCGATTAAGATGGTTGAGCCGCAACATCTTGACCAACTTCTTCATCCTCAGGCATGGTTTTCTTTGTCCCTCCTTTTATCAAAGCTAAAACTTTTACAGTTTACTCATTGGGCTGTTATCAAAATAAGTAAAAGAAGCAACAGCATTGATTCAAGAAGTTGGGGGCCAATATATTTTGAAGATCCCTCTGCTTACAAGGACCAAGTAGTTGCAACAGGCTTGCCTGCATCTCCTGGTGCGGCAGTGGGGCAGGTAGTATTCAATGCTGACGACGCTGAAGCCTGGCATGCTCAAGGAAAGAGTGTCATCTTGGTAAGGGCAGAGACCAGCCCAGAGGATGTTGGTGGTATGCATGCAGCTACTGGAATTTTGACAGCTAGAGGTGGAATGACTTCTCATGCTGCCGTGGTCGCTCGTGGATGGGGGAAATGCTGCGTTTCTGGTTGCTCAGATATCAGAGTAAATGACTCCGAGAAGGTTCTTGTCATTGGAGATTTGGTAATCAATGAAGGTGACTGGATATCCCTCAATGGCTCTACAGGTGAAGTGATATTGGGCAAGCAGCCACTCTCTCCCCCAGCTTTAAGTGGGGATTTGGAGATCTTTATGTCTTGGGCTGATCAAATAAGACGTCTCAAGGTTATGGCCAATGCTGACACTCCTGAAGATGCTCTTACAGCTCGTAACAATGGCGCCCAAGGAATCGGCTTGTGCAGGACAGAGCATATGTTCTTTGCATCGGATGAGAGGATCAGAGCTGTAAGGAAGATGATAATGGCAGTTACAGTCGAACAAAGAAAGGCGGCTTTGGACTTGTTACTACCTTATCAAAGATCCGATTTCGAGGGAATTTTCCGAGCCATGGATGGTCTTCCAGTGACTATTAGACTGTTGGACCCTCCACTCCATGAATTCCTTCCAGAAGGCGACCTGGAAGAGATTGTCAAAGGACTAACTGCAGAGACTGAAATGAGTGAAGATGAAGTGTTCTCTAGAATTGAGAAGCTCTCGGAAGTTAACCCAATGCTCGGATTTCGCGGTTGCAGGCTTGGGATTTCGTACCCGGAGCTGACTGAAATGCAAGCTCGTGCTATTTTCCAGGCTGCTATCTCAATGAGCAATCAAGGAATTAAAGTTTTGCCTGAGATAATGGTTCCATTGGAACTAAGACATCAAGTCAGCTCGATTCGCCGCGTTGCTGAGAAGGTGTTCTCAGAGATGGGTTCCTCCTTAAATTACAAAGTGGGAACCATGATTGAAATTCCTAGAGCTGCTCTGGTTGCAGATGAGGTATTTTATAGAATAATACCACAAGTGTCTAATAGCAAAATAGCAAAGGAAGCAGAGTTTTTCTCATTTGGGACCAATGATCTTACACAAATGACTTTTGGATACAGTAGAGATGATGTTGGCAAGTTTCTTCCTATTTACATATCCAAAGGAATTCTGCAAAATGACCCTTTTGAGGTGCTTGACCAGAAAGGAGTTGGGCAGCTGATCAAGCTGGCTACAGAAAAAGGGAGGGCAGCTAGGCCAAGTTTGAAGGTTGGAATTTGTGGAGAACATGGAGGAGAGCCTTCATCTGTTGCATTCTTTGCAGAGGCTGGACTTGACTATGTTTCTTGTTCTCCTTTCAGAGTTCCAGTTGCAAGATTGGCTGCAGCCCAAGTTGCTGTTTAA 2967 45.33 MSSLMHGSLLHTIADCDQGLLRRGKYHLGHTHLLKEKHSPLRTNRSGRSKGICCQDLHISSPKPERHEPPNRHGSRADAVLSPVIPTTKKRVFTFGKGRSEGNKSMKSLLGGKGANLAEMASIGLSVPPGLTISTEACQEYQQNGNRLPDGLWEEILEGLESVEKDMGAVLGDPSKPLLLSVRSGAAISMPGMMDTVLNLGLNDEVVAGLAAKSGERFAYDSYRRFLDMFGNVVMGISHSLFEEKLENLKIAKGKALDTDLTASDLKELVEQYKDAYVESKGETFPSDPKQQLQLAVKAVFNSWDSPRANKYRSINQITGLKGTAVNIQSMVFGNMGHTSGTGGEDVVAGIRTPEDLDTMKDCMPEAYKELVENCEILERHYKDMMDIEFTVQENRLWMLQCRSGKRTGKGAVKIAVDLVNEGLVDTRTAIKMVEPQHLDQLLHPQAWFSLSLLLSKLKLLQFTHWAVIKISKRSNSIDSRSWGPIYFEDPSAYKDQVVATGLPASPGAAVGQVVFNADDAEAWHAQGKSVILVRAETSPEDVGGMHAATGILTARGGMTSHAAVVARGWGKCCVSGCSDIRVNDSEKVLVIGDLVINEGDWISLNGSTGEVILGKQPLSPPALSGDLEIFMSWADQIRRLKVMANADTPEDALTARNNGAQGIGLCRTEHMFFASDERIRAVRKMIMAVTVEQRKAALDLLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDLEEIVKGLTAETEMSEDEVFSRIEKLSEVNPMLGFRGCRLGISYPELTEMQARAIFQAAISMSNQGIKVLPEIMVPLELRHQVSSIRRVAEKVFSEMGSSLNYKVGTMIEIPRAALVADEVFYRIIPQVSNSKIAKEAEFFSFGTNDLTQMTFGYSRDDVGKFLPIYISKGILQNDPFEVLDQKGVGQLIKLATEKGRAARPSLKVGICGEHGGEPSSVAFFAEAGLDYVSCSPFRVPVARLAAAQVAV 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22588154 22597981 + Lsi05G014770.1 Lsi05g01477 663969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01477 988 Gene3D - 640 988 IPR040442 -
Lsi05g01477 988 PANTHER PHOSPHOENOLPYRUVATE DIKINASE-RELATED 488 987 IPR010121 GO:0006090|GO:0050242
Lsi05g01477 988 PANTHER PHOSPHOENOLPYRUVATE DIKINASE-RELATED 90 343 IPR010121 GO:0006090|GO:0050242
Lsi05g01477 988 PANTHER PHOSPHOENOLPYRUVATE DIKINASE-RELATED 344 447 IPR010121 GO:0006090|GO:0050242
Lsi05g01477 988 ProSitePatterns PEP-utilizing enzymes signature 2. 878 896 IPR023151 GO:0016772
Lsi05g01477 988 Gene3D - 201 285 - -
Lsi05g01477 988 ProSitePatterns PEP-utilizing enzymes phosphorylation site signature. 557 568 IPR018274 GO:0016310|GO:0016772
Lsi05g01477 988 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 626 987 IPR015813 GO:0003824
Lsi05g01477 988 Gene3D - 330 407 - -
Lsi05g01477 988 PANTHER PYRUVATE, PHOSPHATE DIKINASE 488 987 - -
Lsi05g01477 988 PANTHER PYRUVATE, PHOSPHATE DIKINASE 90 343 - -
Lsi05g01477 988 PANTHER PYRUVATE, PHOSPHATE DIKINASE 344 447 - -
Lsi05g01477 988 MobiDBLite consensus disorder prediction 60 74 - -
Lsi05g01477 988 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 108 146 IPR002192 GO:0005524|GO:0016301|GO:0016310
Lsi05g01477 988 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 354 422 IPR002192 GO:0005524|GO:0016301|GO:0016310
Lsi05g01477 988 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 154 342 IPR002192 GO:0005524|GO:0016301|GO:0016310
Lsi05g01477 988 Pfam PEP-utilising enzyme, mobile domain 529 610 IPR008279 GO:0016310|GO:0016772
Lsi05g01477 988 MobiDBLite consensus disorder prediction 57 77 - -
Lsi05g01477 988 Pfam PEP-utilising enzyme, PEP-binding domain 624 987 IPR000121 GO:0016310|GO:0016772
Lsi05g01477 988 Gene3D Pyruvate Phosphate Dikinase, domain 2 408 467 - -
Lsi05g01477 988 Gene3D Phosphohistidine domain 490 614 - -
Lsi05g01477 988 Gene3D - 92 329 IPR013815 GO:0005524
Lsi05g01477 988 SUPERFAMILY Phosphohistidine domain 494 618 IPR036637 GO:0016310|GO:0016772
Lsi05g01477 988 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 91 445 - -
Lsi05g01477 988 PIRSF PPDK 344 452 IPR010121 GO:0006090|GO:0050242
Lsi05g01477 988 PIRSF PPDK 88 343 IPR010121 GO:0006090|GO:0050242
Lsi05g01477 988 PIRSF PPDK 486 988 IPR010121 GO:0006090|GO:0050242
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01477 K01006 ppdK; pyruvate, orthophosphate dikinase [EC:2.7.9.1] - csv:101214608 1737.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g397 . . . . . Bpe14g01163 . . . . . Cma14g01661 Car06g01249 Car14g01494 . Cpe08g00228 Cpe03g01402 Bhi01g00890 . . . Hepe05g1501 . Lcy11g1476 . . . . . . . . . . . Lsi05g01477 . . Cme06g00668 . . . . . Bpe13g00635 . Bma06g01529 . . Cmo14g01705 . . . . . . . . . . . . . Cla05g00597 Cam05g0657 Cec05g0664 Cco05g0661 Clacu05g0650 Cmu05g0619 Cre05g0688 . Csa03g01393 Chy06g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010599 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 32