Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01479 ATGTTGAGGATCCTGAGGAGTGAACTACGGCGTCTCTGCTCAAGGTTATGGTGGCTGATATGGAAACACCCGAAGCGCAGAGTTATTGTCAAAAGGTTTGGGAAGATGAATGTGAAAGGCCGACAAAAAGGTAGACCAGATAAAAATAAAGCCAGAGTTGTGAAGAGCCAGTTGTGTAATTCTGTCATCGAAAGGCCATTTCGAGTTGCTACATTCAATGTTGCCATGTTCTCTCTTGCCCCTGCTGTTCCAGTTGCAGATAAACCAGCAACATTTGGGTTCGGTAGAAAGGAATGTAGTTTTAGAAGCCCTGTGAATCATTGCCCAAAGAGTATACTAAAGCAATCTCCACTGCATACTGCATTAAGTAAGACTGAATCTCTCTCCAGATCAAAGCCAAAAGTTTCCATTAATCTTCCTGACAACGAGATTTCGTTAGCAAACAACAAGTTGTCTGCTTCCATGGAAGACGAAACACTTGGCTTATCGAAGACAACCGACAAAAGGTACTTTAAAAGTCAAGTCCCAGTAAGGTCTCCTGTGTGCTTTCCTTTCTCCATCGCTAATTGGCACTGTGAAGACCACTTGACAAGTAGTAGAACCATCCTAGAAGTTCTCAAAGAGGCAGATGCTGATATATTGGCTTTACAAGATGTGAAGGCTGAGGAATCAAAAGGCATGAAGCCTCTATCTGATTTAGCAGCTGCTTTAGGGATGCATTATGTATTTGCTGAGAGCTGGGCTCCTGAGTATGGAAATGCTGTTTTGTCCAAATGGCCAATCAAAAGATGGAAAGTTCAGAAGATTGCTGATGATGATGATTTCAGAAACTTGCTGAAAGTCGCAATTGACGTGCCAGGGACGGGAGAAGTTAACATCTACTGCACTCAACTTGACCATCTTGATGAGAATTGGAGGATGAGACAGATTAATGCTATAACAAAATCAGTCGACTGTTCGCATATCTTGGTGGGTGGTCTCAATTCTTTGGAGAGATCTGATTACTCACCTGAAAGATGGACTGACATAGTCGAGTACTATGAGAAGGTCGGGAAGCCGACTCCAAAGGTGGAAGTAATGAAGTTTTTGAGGGGAAAAGGCTACATAGATTCAAAAGACTATGCAGGAGATTGTGAGCCAGTGGTGATCATGGCCAAAGGCCAAAATGTTCAGGGAACCTGCAAATACGGCACGAGAGTAGACTATATCTTAGCTTCACAGGATTCAACGTTTAAATTTGTCCCGGGTTCCTACTCGGTCGTGTCGTCGAAAGGCACTTCCGACCACCACATTGTCAAGGCAGAGTTTGTAGGAGTAGGACAGAAAGCAAGCAGAGGGCAAAAGGATTTAAAGCACAGGATTCTCAAACATGTTCTTCAATAG 1383 43.38 MLRILRSELRRLCSRLWWLIWKHPKRRVIVKRFGKMNVKGRQKGRPDKNKARVVKSQLCNSVIERPFRVATFNVAMFSLAPAVPVADKPATFGFGRKECSFRSPVNHCPKSILKQSPLHTALSKTESLSRSKPKVSINLPDNEISLANNKLSASMEDETLGLSKTTDKRYFKSQVPVRSPVCFPFSIANWHCEDHLTSSRTILEVLKEADADILALQDVKAEESKGMKPLSDLAAALGMHYVFAESWAPEYGNAVLSKWPIKRWKVQKIADDDDFRNLLKVAIDVPGTGEVNIYCTQLDHLDENWRMRQINAITKSVDCSHILVGGLNSLERSDYSPERWTDIVEYYEKVGKPTPKVEVMKFLRGKGYIDSKDYAGDCEPVVIMAKGQNVQGTCKYGTRVDYILASQDSTFKFVPGSYSVVSSKGTSDHHIVKAEFVGVGQKASRGQKDLKHRILKHVLQ 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22602319 22604076 + Lsi05G014790.1 Lsi05g01479 663971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01479 460 PANTHER ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN 1 454 - -
Lsi05g01479 460 Pfam Endonuclease/Exonuclease/phosphatase family 199 429 IPR005135 GO:0003824
Lsi05g01479 460 Gene3D Endonuclease/exonuclease/phosphatase 185 437 IPR036691 -
Lsi05g01479 460 SUPERFAMILY DNase I-like 193 436 IPR036691 -
Lsi05g01479 460 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 1 454 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01479 - - - csv:101215085 858.596
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00912 Lsi-Chr5:16299724 Lsi05g01479 Lsi-Chr5:22602319 1.59E-157 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g395 . . . . . . . . . . . Cma14g01657 . Car14g01491 Sed02g1295 . Cpe03g01401 Bhi01g00893 Tan10g0919 Cmetu06g0465 . Hepe05g1499 . Lcy11g1475 . . . . . . . . . Cone7ag0192 . Lsi05g01479 . . Cme06g00670 . Blo07g00197 . . . Bpe13g00636 . Bma06g01528 . . Cmo14g01702 . . . . . . . . . . . . . Cla05g00599 Cam05g0659 Cec05g0666 . Clacu05g0652 Cmu05g0621 Cre05g0690 . Csa03g01396 Chy06g00639 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011959 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30