Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01481 ATGGCCACCTCCCAGCTTAACCAAAAAACCCTCATCGGCGCCGGTAACCTGATCAGAATCCTCCCAACCGGCACCGTCTTCCTCTTCCAATTCCTCAGCCCTGTCCTCACCAACAGCAGCCACTGCGAGCCGGTCCACAAAGTCCTCGTTCTCACTCTCGTCATCCTTTGTGGTCTCTCTTGTTACCTCTCCTCCTTTACTGACTCCTATGTCAGCTCTGATGGTACCGTCCAATGGACCATCGTGACGCCCTCTGGCATGTGGCCAACTCCGCCGACATCAGAGTCTTTGGACTTGTCGTCGTACAAGCTTCAGTTAGGGGATTTCATCCACGCGACGTTTTCCGCAGCCGTGTTTGCTGTTTTGGTGGTGATGGACTCTAATATAGTACACTGCTTCTTCCCTAGCTTGATGGAGCAGTATAAGGTATTGGTTCAAGCTTTGCCGCCAGTGGTTGGAGCGGTATCTAGTGTCGTGTTCGTCACATTCCCTAATACTCGCCATGGCATAGGGTACCATTCTACTGCAACTACCATCGGAGTTCAGAAAGCTTCCTTAGTCTAA 564 51.6 MATSQLNQKTLIGAGNLIRILPTGTVFLFQFLSPVLTNSSHCEPVHKVLVLTLVILCGLSCYLSSFTDSYVSSDGTVQWTIVTPSGMWPTPPTSESLDLSSYKLQLGDFIHATFSAAVFAVLVVMDSNIVHCFFPSLMEQYKVLVQALPPVVGAVSSVVFVTFPNTRHGIGYHSTATTIGVQKASLV 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22617740 22618303 + Lsi05G014810.1 Lsi05g01481 663973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01481 187 Pfam Protein of unknown function (DUF679) 14 172 IPR007770 -
Lsi05g01481 187 PANTHER PROTEIN DMP3 4 178 IPR007770 -
Lsi05g01481 187 PANTHER PROTEIN DMP2 4 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01481 - - - cmo:103484187 319.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01481 Lsi-Chr5:22617740 Lsi05g01483 Lsi-Chr5:22629159 3.57E-85 dispersed
Lsi05g01480 Lsi-Chr5:22613418 Lsi05g01481 Lsi-Chr5:22617740 9.12E-92 tandem
Lsi05g01481 Lsi-Chr5:22617740 Lsi05g01482 Lsi-Chr5:22624312 7.61E-122 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g394 . . . . . . . . . . Cma06g01450 Cma14g01656 Car06g01251 Car14g01490 . Cpe08g00226 Cpe03g01400 . . . . . . . . . . . . . . . . Cone7ag0191 Cone4ag0185 Lsi05g01481 . . Cme06g00671 . . . . . Bpe13g00637 . Bma06g01527 . Cmo06g01450 Cmo14g01701 . . . . . . . . . . . . . Cla05g00600 Cam05g0660 Cec05g0668 Cco05g0664 Clacu05g0654 Cmu05g0623 Cre05g0692 . Csa03g01397 Chy06g00640 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002299 0 3 0 1 1 2 2 3 3 2 2 3 2 3 3 2 3 2 2 3 2 1 1 3 1 4 2 3 3 1 63